View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_low_6 (Length: 369)
Name: NF11102_low_6
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 196 - 348
Target Start/End: Complemental strand, 2442603 - 2442451
Alignment:
| Q |
196 |
taaatatgtgcatatccttgcgcagatatttcaaaaagtaatagtgccttcgcaatacatccaagtctttattaggatcatacaaaatcaaatgcaaaac |
295 |
Q |
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| T |
2442603 |
taaatatgtgcatatccttgcgcagatatttcaaaaagtaatattgcctttgcaatacatccaagtctttattaggatcatacaaaatcaaatgtaaaac |
2442504 |
T |
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| Q |
296 |
cataaaactcaatgcatggttgtgaactataacaatgtaatgcacgatgagag |
348 |
Q |
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| T |
2442503 |
cataaaactcaatgcatggttgtgaactataacaatgtaatgcacgatgagag |
2442451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 2442771 - 2442665
Alignment:
| Q |
3 |
ttaaattgacattagaatatgaattcaagaaggcaccatctgagacacaattcaaagaaaacaaagtattatatagtaaaaaatatcaaaatagtcttcg |
102 |
Q |
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| T |
2442771 |
ttaaattgacattagaatatgaattcaagaaggcaccatctgagacacaattcaaagaaaacaaagtattatatagtaaaaaatatcaaaattgtcttcg |
2442672 |
T |
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| Q |
103 |
tattcca |
109 |
Q |
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||||||| |
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| T |
2442671 |
tattcca |
2442665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 2442632 - 2442600
Alignment:
| Q |
110 |
ctaacggtcacaaagaaccacatgtctgataaa |
142 |
Q |
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| T |
2442632 |
ctaacagtcacaaagaaccacatgtctgataaa |
2442600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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