View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_low_8 (Length: 314)
Name: NF11102_low_8
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 3009784 - 3010073
Alignment:
| Q |
19 |
atagatatgaagccatgcttagttatgaacatattttaatgaatatctttgaataattagnnnnnnnnacctgtctaaactaccaaaatatgatttgttg |
118 |
Q |
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| T |
3009784 |
atagatatgaagccatgcttagttatgaacatattttaatgaatatctttgaataattagttttttttacctgtctaaactaccaaaatatgatttgttg |
3009883 |
T |
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| Q |
119 |
cagggtttgaaggatagtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaacacctt |
218 |
Q |
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| T |
3009884 |
cagggtttgaaggatagtggaattggttctcaaggaatcacaaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaacacctt |
3009983 |
T |
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| Q |
219 |
cttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttccactttcctatgcttc |
308 |
Q |
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| T |
3009984 |
cttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttccactttcctatgcttc |
3010073 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 54724744 - 54724647
Alignment:
| Q |
134 |
agtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaacaccttcttatacaatggg |
231 |
Q |
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||||||||||| || |||||||| |||||||| || ||||||||||| || || || || || || || ||||| |||| ||||||||||| ||||| |
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| T |
54724744 |
agtggaattggatcacaaggaattaccaacagcataaacatgatgacaaaaatcaaaactaccgtgataaacttgccaagcccttcttataccatggg |
54724647 |
T |
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