View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11103_high_5 (Length: 383)
Name: NF11103_high_5
Description: NF11103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11103_high_5 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 30 - 373
Target Start/End: Original strand, 48244478 - 48244821
Alignment:
| Q |
30 |
ttgaaacaaagacattggaacaaaatttctttcatttcaaactcaattttaaccaaacaattttacaatatccaatacattgatcccacaacagatattt |
129 |
Q |
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| T |
48244478 |
ttgaaacaaagacattggaacaaaaaaaaattcatttcaaactcaattttaaccaaacaattttacaatatctaatacattgatcccacaacagatattt |
48244577 |
T |
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| Q |
130 |
tacagtgccaaagctggagtgcagggacattttcgattgttgatctatgcaacactagccaccaagtgcaacatgcattgtagggatggaaccatctttt |
229 |
Q |
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| T |
48244578 |
tgcagtgccaaagctggagtgtagggacattttcgattgttgatctatgcaacactagccaccaagtgcaacaggcattgtagggatggaaccatctttt |
48244677 |
T |
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| Q |
230 |
tgaggaatttgctttatgttattttccatcctctcgattggtgttttgattgttacgacctcttttattatgtttttgcagtctcttgtactcagcctct |
329 |
Q |
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| T |
48244678 |
agaggaatttgctttatgttattttccatcctctcgatcggtgttttgattgttacgacctcttttattatgtttttgcagtctcttgtactcagcctct |
48244777 |
T |
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| Q |
330 |
ttctcatcatccgaaaattctacttcatcggacacctcttcatc |
373 |
Q |
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| T |
48244778 |
ttctcatcatccaaaaattctgcttcatcggacacctcttcatc |
48244821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 64 - 358
Target Start/End: Original strand, 48240648 - 48240946
Alignment:
| Q |
64 |
tttcaaactcaattttaaccaaacaattttacaatatccaatacattgatcccacaacagatattttacagtgccaaagctggagtgcagggacatttt- |
162 |
Q |
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| T |
48240648 |
tttcaaactcaattttaagcaaacaattttacaatatccaatacattgaacctacaacagatattttacactgccaaagctggagtgcagggacattttt |
48240747 |
T |
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| Q |
163 |
cgattgttgatctatgcaacactagccaccaagtgcaacatgca----ttgtagggatggaaccatctttttgaggaatttgctttatgttattttccat |
258 |
Q |
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| T |
48240748 |
cgattgttgatctat-caacactatccaccaagtgcaacaaacagacattgtagggatggaaccatcttttagaggaacttgctttctgttgttttccat |
48240846 |
T |
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| Q |
259 |
cctctcgattggtgttttgattgttacgacctcttttattatgtttttgcagtctcttgtactcagcctctttctcatcatccgaaaattctacttcatc |
358 |
Q |
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| T |
48240847 |
cctcttgatcggtattttgattgttacgacctcttttattctgttttcgcagtctctggtactcagcctctttctcatcatccgaaaattctgcttcatc |
48240946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 205 - 373
Target Start/End: Original strand, 38172161 - 38172328
Alignment:
| Q |
205 |
cattgtagggatggaaccatctttttgaggaatttgctttatgttattttccatcctctcgattggtgttttgattgttacgacctcttttattatgttt |
304 |
Q |
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|||||||| |||||||||||||||| |||||| |||||| |||| |||||||||||| | | ||| |||||||||| |||||||||||||| ||||| |
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| T |
38172161 |
cattgtagtgatggaaccatcttttagaggaacttgcttcctgttgttttccatcctcctg-tcggtactttgattgtttcgacctcttttattttgttt |
38172259 |
T |
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| Q |
305 |
ttgcagtctcttgtactcagcctctttctcatcatccgaaaattctacttcatcggacacctcttcatc |
373 |
Q |
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| T |
38172260 |
taccagtctcttgtactcggcctctttctcgtcatccgaaaattcttcttcatcagacacctcctcatc |
38172328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 30864 - 30935
Alignment:
| Q |
302 |
tttttgcagtctcttgtactcagcctctttctcatcatccgaaaattctacttcatcggacacctcttcatc |
373 |
Q |
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|||||||| | || |||| || ||||||||||||||||| ||||| ||||||||||| ||| ||||||||| |
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| T |
30864 |
tttttgcattttcctgtattcggcctctttctcatcatctgaaaactctacttcatcaaacaactcttcatc |
30935 |
T |
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