View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11103_high_6 (Length: 360)
Name: NF11103_high_6
Description: NF11103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11103_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 60 - 341
Target Start/End: Original strand, 54217772 - 54218053
Alignment:
| Q |
60 |
caagaaacaaattgaattaaattaattcagttataacaactataatctaagttgaagttgaattatgcagggtgggtgctcaatttgtttgcagctatat |
159 |
Q |
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| T |
54217772 |
caagaaacaaattgaattaaattaattcagttataacaactataatctaagttgaagttgaattatgcagggtgggtgctcaatttgtttgcagctatat |
54217871 |
T |
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| Q |
160 |
cacacttcctctctatgcactcgtcacacaggtacatttcatttttaaggtcatgttaacaagtacccttataatacttgttaagcaagcaaagtataga |
259 |
Q |
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| T |
54217872 |
cacacttcctctctatgcactcgtcacacaggtacatttcatttttaaggtcatgttaacaagtacccttatgatacttgttaagcaagcaaagtataga |
54217971 |
T |
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| Q |
260 |
aactttgtattaaaaaatgaaatgaattgatgaaggagaatattaatcttgttgttatgatttaaaaatatcagatgggatc |
341 |
Q |
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| T |
54217972 |
aactttgtattgaaaaatgaaatgaattgatgaaggagaatattaatcttgttgttatgatttaaaaatatcagatgggatc |
54218053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 54217708 - 54217747
Alignment:
| Q |
1 |
gaaaaagggttacataggagatgagatctacctattagcc |
40 |
Q |
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| T |
54217708 |
gaaaaagggttacataggagatgagatctacctattagcc |
54217747 |
T |
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