View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11103_high_9 (Length: 272)
Name: NF11103_high_9
Description: NF11103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11103_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 51319984 - 51319741
Alignment:
| Q |
12 |
aagaatccagaattggtatggattaaaggccatgaagaacagttaccaattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttc |
111 |
Q |
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| T |
51319984 |
aagaatccagaattggtatggattaaaggccatgaagaacagttaccaattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttc |
51319885 |
T |
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| Q |
112 |
aaaggattgaacaagacaacaacattaacttaccatttcaagatataatcaaactatttttcttgaccctgaccaacaacatttatggtaagtaaaaaag |
211 |
Q |
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| T |
51319884 |
aaaggattgaacaagacaacaacattaatttaccatttcaagatataatcaaactatttttcttgaccctgaccaacaacatttatggtaagtaaaaaag |
51319785 |
T |
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| Q |
212 |
tgtgcgcacaattgttttggtatgaatcaaatatacatctatca |
255 |
Q |
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| T |
51319784 |
tgtgcgcacaattgttttggtatgaatcaaatatacatctatca |
51319741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 51343991 - 51343804
Alignment:
| Q |
12 |
aagaatccagaattggtatggattaaaggccatgaagaacagttaccaattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttc |
111 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||| ||| || ||||||||||||||| |||||||||||| |
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| T |
51343991 |
aagaatccagaattggtatggattaaaggtcatgaagaaaagttgccaattcaattggcatcctcagccgggcaacttcatatggtggagtttttgtttc |
51343892 |
T |
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| Q |
112 |
aaaggattgaacaagacaacaacattaact---taccatttcaagatataatcaaactatttttcttgaccctgaccaacaacattta |
196 |
Q |
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| T |
51343891 |
aaaggattcaacaattcaacaacattaatttactaccatttcaagatattgtcaatctatttttcttgacccttaccaacaacattta |
51343804 |
T |
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