View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11103_low_1 (Length: 674)
Name: NF11103_low_1
Description: NF11103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11103_low_1 |
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| [»] scaffold1185 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Original strand, 35618748 - 35619395
Alignment:
| Q |
1 |
ccgaatcttggaagacgcgtttgtttcttgccgtccatacagcccacacagaagcaaaccaaataat----atgtatgagtgagtaactataggcaagcc |
96 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
35618748 |
ccgaatcttggaagacgcgtttgtttctttccgtccatacaactgacacagaagcaaaccaaataattcttatgtatgagcgagtaactataggcaagcc |
35618847 |
T |
|
| Q |
97 |
agccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaaccattgcagcaaatgagcccaaagcgaactgaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35618848 |
agccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaaccattgcagcaaatgagcccaaagcgaactgaaa |
35618947 |
T |
|
| Q |
197 |
gtatcacaatttaaaaatagatgagtcgcaaagtctgtttcccctcacccaaccacacacaccgattcctgaacctggagaatgcgccaacgcatcaaat |
296 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| | || |||| |
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| T |
35618948 |
gtatcacaatttaaaaatagatgagtcgcaaattctgtttccccacacccagccacacacaccgattcctgaacctagagaatgcgccgccacaccaaac |
35619047 |
T |
|
| Q |
297 |
tatctttagttgaaagtctattatgaagaagacgccacatgaacaaagagacttttgtagggatatactttgtgaaaagttgtaatnnnnnnngatggtt |
396 |
Q |
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|||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35619048 |
tatctttagttggaagtatgttgtgaagaagacgccacatgaacaaagagacttttgtagggatatactttgtgaaaagttgtaataaaaaaagatggtt |
35619147 |
T |
|
| Q |
397 |
agagttagttcagtgggcttataaacaaactgttagagtcggttagatatagcaacagacttatccattatccattttctgtatcagtatattatacact |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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|
| T |
35619148 |
agagttagttcagtgggcttataaacaaactgttagagtcggttagatatagcaacagacttatccattatccattttctgtatcagta---tatatact |
35619244 |
T |
|
| Q |
497 |
tccttgctgaacattttgtttttcatgcaatgagaatggatcttgcttctgttcttcttttcccctctcttacattccttcgtattttagattcctcata |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35619245 |
tccttgctgaacattttgtttttcatgcaatgagaatggatcttgcttctgttcttcttttcccctctcttacattccttcgtattttagattcctcata |
35619344 |
T |
|
| Q |
597 |
tggtgtcaaactgtcaattcctcagcttcgtcattgtcatgcctcgaaatgctcctccc |
655 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35619345 |
tgg--------tgtcaattcctcatcttcgtcattgtcatgcctcgaaatgctcctccc |
35619395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 16587525 - 16587375
Alignment:
| Q |
72 |
atgagtgagtaactataggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaaccattgcag |
171 |
Q |
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|||||||||| ||| ||| |||||||| |||||| ||| ||||| ||||||||| ||||| ||||||| || |||| ||||| || |||||||| ||| |
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| T |
16587525 |
atgagtgagtgactctagacaagccagtcatattagtatattgaatgaaatgatttcgaaagtcacctaaatgaaccgaagaaatacccaaccaatgcca |
16587426 |
T |
|
| Q |
172 |
caaatgagcccaaagcgaactgaaagtatcacaatttaaaaatagatgagt |
222 |
Q |
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|| ||||||||||||||||||||| | |||||| |||||| |||||||| |
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| T |
16587425 |
cacatgagcccaaagcgaactgaatatgtcacaacctaaaaacagatgagt |
16587375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1185 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1185
Description:
Target: scaffold1185; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 1957 - 1901
Alignment:
| Q |
85 |
tataggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctga |
141 |
Q |
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||||||||| || |||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
1957 |
tataggcaaacccgccatattagtaaactgaaggaaatgatgtcgaatgtcacctga |
1901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 14392492 - 14392567
Alignment:
| Q |
87 |
taggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaa |
162 |
Q |
| |
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||||||| || |||||||| ||||| ||| |||||||||||||||||||||||| | ||| ||||| || ||||| |
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| T |
14392492 |
taggcaaacccgccatattagtaaactgaaggaaatgatgtcgaatgtcacctgataaaaccgaagaaatacccaa |
14392567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 2821008 - 2821117
Alignment:
| Q |
48 |
acagaagcaaaccaaataat----atgtatgagtgagtaactataggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaa |
143 |
Q |
| |
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||||||||||||||||| || ||| ||||||||| ||| |||| || || ||||||| ||||||||| | ||||||| || ||||||||||||| |
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| T |
2821008 |
acagaagcaaaccaaattattcgcatgaatgagtgagcgactctaggaaatcctgccatatcagtaaattgaattaaatgatatctaatgtcacctgaac |
2821107 |
T |
|
| Q |
144 |
gaactgaaga |
153 |
Q |
| |
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|||| ||||| |
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| T |
2821108 |
gaaccgaaga |
2821117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 3156456 - 3156342
Alignment:
| Q |
107 |
gtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaaccattgcagcaaatgagcccaaagcgaactgaaagtatcacaat |
206 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| || | |||| || ||| |||| |||| || |||| ||||||| ||| ||||||| ||||| |
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| T |
3156456 |
gtaaattgagtaaaatgatgtcgaatgtcacctgagggagccaaagaaataccccaccaatgcaacacatga-cccaaagagaattgaaagtgtcacatc |
3156358 |
T |
|
| Q |
207 |
ttaaaaatagatgagt |
222 |
Q |
| |
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|||||| |||||||| |
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|
| T |
3156357 |
ctaaaaacagatgagt |
3156342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 37983771 - 37983825
Alignment:
| Q |
87 |
taggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctga |
141 |
Q |
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||||||| || |||||||| ||||| ||| |||||||||||||||||||||||| |
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|
| T |
37983771 |
taggcaaacccgccatattagtaaactgaaggaaatgatgtcgaatgtcacctga |
37983825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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