View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11103_low_11 (Length: 256)

Name: NF11103_low_11
Description: NF11103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11103_low_11
NF11103_low_11
[»] chr6 (9 HSPs)
chr6 (1-238)||(29733213-29733450)
chr6 (70-238)||(29697492-29697660)
chr6 (72-238)||(29793683-29793849)
chr6 (72-224)||(28481274-28481426)
chr6 (91-238)||(29761234-29761381)
chr6 (105-238)||(28491685-28491818)
chr6 (105-238)||(29804095-29804228)
chr6 (70-238)||(29679707-29679875)
chr6 (88-238)||(29467699-29467849)
[»] scaffold0012 (1 HSPs)
scaffold0012 (42-238)||(241846-242042)
[»] chr8 (1 HSPs)
chr8 (46-238)||(12588282-12588468)
[»] chr3 (8 HSPs)
chr3 (88-235)||(613053-613200)
chr3 (105-142)||(23406911-23406948)
chr3 (105-142)||(23449432-23449469)
chr3 (105-142)||(23456196-23456233)
chr3 (105-142)||(23465565-23465602)
chr3 (105-142)||(23480922-23480959)
chr3 (105-142)||(35766097-35766134)
chr3 (107-143)||(36025625-36025661)
[»] scaffold0201 (1 HSPs)
scaffold0201 (105-138)||(13743-13776)
[»] scaffold0022 (1 HSPs)
scaffold0022 (105-142)||(167478-167515)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29733450 - 29733213
Alignment:
Q  1 tttctataaacaactgttctttcctttgaatctgaatactaatattcatcaaaccaactcattcactcatcatggcttcccacacagtcacagatcgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  29733450 tttctataaacaactgttctttcctttgaatctgaatactaatattcatcaaaccaactcattcactcatcatggctcccctcacagtcacaaatcgatt 29733351  T
Q  101 caagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaagctctagatgacaaaggagttagaactttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29733350 caagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaagctctagatgacaaaggagttagaactttc 29733251  T
Q  201 atggacgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29733250 atggacgatgaggagcttcaaaaaggcgaagaaatcac 29733213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 29697660 - 29697492
Alignment:
Q  70 tcatggcttcccacacagtcacagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaa 169  Q
    |||||||| ||| |||||||||| ||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||  | |||||||||||    
T  29697660 tcatggctcccctcacagtcacaaatcaattcaagtatgatgtttttctcagttttagaggcgaggatactcgtcatggtttcaccggttatctcaagaa 29697561  T
Q  170 agctctagatgacaaaggagttagaactttcatggacgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    |||||| ||||||||||||||| ||||||||||||| |   |||||||| |||||||||||||||||||    
T  29697560 agctcttgatgacaaaggagttcgaactttcatggatgccaaggagcttaaaaaaggcgaagaaatcac 29697492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 29793849 - 29793683
Alignment:
Q  72 atggcttcccacacagtcacagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaag 171  Q
    |||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||  || ||||||||||||    
T  29793849 atggcttccctcactgtcacagatcgattcaagtacgatgttttcctcagctttcgaggtgaggatactcgctatggtttcactggcaatctcaagaaag 29793750  T
Q  172 ctctagatgacaaaggagttagaactttcatggacgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    |||| ||||||||||| ||  |||||||||| || |||||  ||||| ||||||| || ||||||||    
T  29793749 ctcttgatgacaaaggggtccgaactttcatcgatgatgaaaagcttaaaaaaggagatgaaatcac 29793683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 28481426 - 28481274
Alignment:
Q  72 atggcttcccacacagtcacagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaag 171  Q
    |||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||  || ||||||||||||    
T  28481426 atggcttccctcactgtcacagatcgattcaagtacgatgttttcctcagctttcgaggtgaggatactcgctatggtttcactggcaatctcaagaaag 28481327  T
Q  172 ctctagatgacaaaggagttagaactttcatggacgatgaggagcttcaaaaa 224  Q
    |||| ||||||||||| ||  |||||||||| || |||||  ||||| |||||    
T  28481326 ctcttgatgacaaaggggtccgaactttcatcgatgatgaaaagcttaaaaaa 28481274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 29761381 - 29761234
Alignment:
Q  91 cagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaagctctagatgacaaaggagt 190  Q
    |||||| ||||||||| |||||||| ||||||||  |||| || ||||||||  ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  29761381 cagatcaattcaagtacgatgttttcctcagcttcagaggcgaagatactcgccatggtttcactggctatctcaagaaagctcttgatgacaaaggagt 29761282  T
Q  191 tagaactttcatggacgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    | ||||||||||||| ||| ||||||| | |||||| |||||||||||    
T  29761281 tcgaactttcatggatgataaggagctacgaaaaggtgaagaaatcac 29761234  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 28491818 - 28491685
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaagctctagatgacaaaggagttagaactttcatgg 204  Q
    |||||||| || || ||||||||||||||||||||||| || ||||||||  |  ||||   |||||||||  |||||||||||||  | ||||||||||    
T  28491818 tatgatgtgttccttagctttcgaggtgaggatactcgctacggtttcactggaaatctatggaaagctctccatgacaaaggagtccgtactttcatgg 28491719  T
Q  205 acgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    |||| ||||||||||||||||| |||||||||||    
T  28491718 acgacgaggagcttcaaaaaggtgaagaaatcac 28491685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 29804228 - 29804095
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaagctctagatgacaaaggagttagaactttcatgg 204  Q
    |||||||| || || ||||||||||||||||||||||| || ||||||||  |  ||||   |||||||||  |||||||||||||  | ||||||||||    
T  29804228 tatgatgtgttccttagctttcgaggtgaggatactcgctacggtttcactggaaatctatggaaagctctccatgacaaaggagtccgtactttcatgg 29804129  T
Q  205 acgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    |||| ||||||||||||||||| |||||||||||    
T  29804128 acgacgaggagcttcaaaaaggtgaagaaatcac 29804095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 29679875 - 29679707
Alignment:
Q  70 tcatggcttcccacacagtcacagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaa 169  Q
    |||||||||||| ||||||||||  ||| |||||||| |||||||||||||||||| |||| || || || ||  | ||||||||  || | |||  |||    
T  29679875 tcatggcttccctcacagtcacatgtcgcttcaagtacgatgtttttctcagctttagaggcgaagacacccgccacggtttcactggcaacctctggaa 29679776  T
Q  170 agctctagatgacaaaggagttagaactttcatggacgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    |||||| |||||||||||||| |||||||||||||| || ||| | ||||| ||||| || ||||||||    
T  29679775 agctcttgatgacaaaggagtcagaactttcatggatgacgagaatcttcagaaaggggatgaaatcac 29679707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 29467699 - 29467849
Alignment:
Q  88 tcacagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaagctctagatgacaaagg 187  Q
    |||||||||| ||||| |||||  ||||||| |||||  |||| || ||||||||  ||||||||||  || ||||   |||||| ||   ||||| |||    
T  29467699 tcacagatcgtttcaaatatgacctttttcttagcttcagaggcgaagatactcgccatggtttcaccggcaatctttggaaagcactgagtgacagagg 29467798  T
Q  188 agttagaactttcatggacgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    | ||   || |||||||| ||||| || |||||||||||||||||||||||    
T  29467799 aattcacaccttcatggatgatgaagaacttcaaaaaggcgaagaaatcac 29467849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 242042 - 241846
Alignment:
Q  42 atattcatcaaaccaactcattcactcatcatggcttcccacacagtcacagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactc 141  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||| ||| ||||||||| ||||||||||||||||| |||  |||| || |||||||    
T  242042 atattcatcaaaccaactcatccactcatcatggcttccctcacagttacaaatcgattcacgtatgatgtttttctcaacttcagaggcgaagatactc 241943  T
Q  142 gttatggtttcacaagctatctcaagaaagctctagatgacaaaggagttagaactttcatggacgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
    |  ||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| ||  ||||||||  |||||| |||||||||||    
T  241942 gccatggtttcacaagctatctcaagaaagctcttgatgacaaaggaattcgaactttcatggatgacaaggagcttagaaaaggtgaagaaatcac 241846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 12588282 - 12588468
Alignment:
Q  46 tcatcaaaccaactcattcactcatcatggcttcccacacagtcacagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactcgtta 145  Q
    |||||||||||| |||||||| ||||||||||||||      ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  12588282 tcatcaaaccaattcattcacacatcatggcttccc------tcacagatcaattcaagtacgatgtttttctcagctttcgaggtgaggatactcgcta 12588375  T
Q  146 tggtttcacaagctatctcaagaaagctctagatgacaaaggagttagaactttcatggacgatgaggagcttcaaaaaggcgaagaaatcac 238  Q
     ||||||||  || |||||||||||||||||||||||||||||||| ||||||||||||| ||  ||||| || |||||||||||||||||||    
T  12588376 cggtttcactggcaatctcaagaaagctctagatgacaaaggagttcgaactttcatggatgacaaggagattaaaaaaggcgaagaaatcac 12588468  T

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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 613053 - 613200
Alignment:
Q  88 tcacagatcgattcaagtatgatgtttttctcagctttcgaggtgaggatactcgttatggtttcacaagctatctcaagaaagctctagatgacaaagg 187  Q
    |||||||||||||||||||||| |||||  |||| ||  |||| || |||||||| |||||||||||  ||||||||||||||||||| |||||||||||    
T  613053 tcacagatcgattcaagtatgacgttttcatcagtttcagaggcgaagatactcgctatggtttcaccggctatctcaagaaagctcttgatgacaaagg 613152  T
Q  188 agttagaactttcatggacgatgaggagcttcaaaaaggcgaagaaat 235  Q
    |||  | ||||||||||| || || ||||||| |||||||||||||||    
T  613153 agtccgtactttcatggatgacgacgagcttcgaaaaggcgaagaaat 613200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 23406948 - 23406911
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcg 142  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  23406948 tatgaagtttttcttagctttcgaggtgaggatactcg 23406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 23449469 - 23449432
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcg 142  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  23449469 tatgacgtttttcttagctttcgaggtgaggatactcg 23449432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 23456233 - 23456196
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcg 142  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  23456233 tatgacgtttttcttagctttcgaggtgaggatactcg 23456196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 23465602 - 23465565
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcg 142  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  23465602 tatgaggtttttcttagctttcgaggtgaggatactcg 23465565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 23480959 - 23480922
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcg 142  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  23480959 tatgacgtttttcttagctttcgaggtgaggatactcg 23480922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 35766097 - 35766134
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcg 142  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  35766097 tatgatgtttttcttagctttcgaggtgaagatactcg 35766134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 36025661 - 36025625
Alignment:
Q  107 tgatgtttttctcagctttcgaggtgaggatactcgt 143  Q
    |||||||||| |||||||||| |||||||||||||||    
T  36025661 tgatgtttttatcagctttcgtggtgaggatactcgt 36025625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 13776 - 13743
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggata 138  Q
    |||||||||||||| |||||||||||||||||||    
T  13776 tatgatgtttttcttagctttcgaggtgaggata 13743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 167478 - 167515
Alignment:
Q  105 tatgatgtttttctcagctttcgaggtgaggatactcg 142  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  167478 tatgatgtgtttcttagctttcgaggtgaggatactcg 167515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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