View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11103_low_12 (Length: 252)
Name: NF11103_low_12
Description: NF11103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11103_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 52767208 - 52767002
Alignment:
| Q |
37 |
gtgcctcagcttttggaggtaatttaaggatcaagtttggtcaatttttaggnnnnnnngcataatacttgggaattagtaactctctaaacgcttagct |
136 |
Q |
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| T |
52767208 |
gtgcctcagcttttggaggtaatttaagaatcaagtttggtcaatttttaggtttttttgcataatacttgggcattagtaactctctaaacgcttagct |
52767109 |
T |
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| Q |
137 |
ctttgggggcaatgagagctgtcaagatagccaaagacaaaaactgaaataatttatagcttgagaaagactcgatgc-ttatggttttagctttaattc |
235 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52767108 |
ctttgggggcaatgagagctgttaagatagccaaagacaaaaactgaaataatttatagcttgagaaagactcgatgctttatggttttagctttaattc |
52767009 |
T |
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| Q |
236 |
ctctgtg |
242 |
Q |
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|| |||| |
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| T |
52767008 |
ctttgtg |
52767002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 52767292 - 52767254
Alignment:
| Q |
1 |
catcaagaaagtagtgtagcatcctcctactgagcagtg |
39 |
Q |
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| T |
52767292 |
catcaagaaagtagtgtagcatcctcctactgagcagtg |
52767254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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