View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11103_low_4 (Length: 432)

Name: NF11103_low_4
Description: NF11103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11103_low_4
NF11103_low_4
[»] chr6 (31 HSPs)
chr6 (1-229)||(31290153-31290370)
chr6 (227-411)||(31290408-31290598)
chr6 (175-223)||(26952498-26952546)
chr6 (175-223)||(26961991-26962039)
chr6 (175-223)||(26980289-26980337)
chr6 (336-401)||(2820373-2820438)
chr6 (175-212)||(26649356-26649393)
chr6 (175-212)||(26755324-26755361)
chr6 (227-272)||(27608250-27608295)
chr6 (227-272)||(27715637-27715682)
chr6 (317-389)||(5970098-5970170)
chr6 (317-389)||(15443692-15443764)
chr6 (227-274)||(26058891-26058938)
chr6 (227-274)||(26078861-26078908)
chr6 (316-387)||(32313403-32313474)
chr6 (316-374)||(8931591-8931649)
chr6 (317-375)||(9195744-9195802)
chr6 (317-375)||(9617445-9617503)
chr6 (317-375)||(16766708-16766766)
chr6 (329-378)||(10335378-10335427)
chr6 (317-386)||(25038061-25038130)
chr6 (317-374)||(26562701-26562758)
chr6 (228-261)||(26876539-26876572)
chr6 (333-378)||(29449689-29449734)
chr6 (335-388)||(34625732-34625785)
chr6 (327-387)||(7377978-7378038)
chr6 (323-375)||(9025490-9025542)
chr6 (327-375)||(9629394-9629442)
chr6 (317-389)||(10760832-10760903)
chr6 (327-387)||(20371110-20371170)
chr6 (317-385)||(21395298-21395365)
[»] chr1 (14 HSPs)
chr1 (268-399)||(264591-264724)
chr1 (317-375)||(44482241-44482299)
chr1 (329-389)||(14332406-14332465)
chr1 (339-383)||(23605132-23605176)
chr1 (344-387)||(17080898-17080941)
chr1 (317-387)||(5376490-5376560)
chr1 (323-385)||(6427351-6427413)
chr1 (56-86)||(18008612-18008642)
chr1 (317-375)||(25361897-25361955)
chr1 (321-375)||(34712377-34712431)
chr1 (334-380)||(43609825-43609871)
chr1 (344-389)||(21057780-21057825)
chr1 (329-373)||(40158412-40158456)
chr1 (327-387)||(41877470-41877530)
[»] scaffold0022 (1 HSPs)
scaffold0022 (323-390)||(99889-99956)
[»] chr5 (14 HSPs)
chr5 (317-375)||(22423802-22423860)
chr5 (322-380)||(4991372-4991429)
chr5 (321-390)||(38749557-38749626)
chr5 (323-366)||(16374338-16374381)
chr5 (317-387)||(3966502-3966572)
chr5 (317-387)||(18592072-18592142)
chr5 (317-375)||(21522761-21522819)
chr5 (317-375)||(21533327-21533385)
chr5 (323-385)||(43208270-43208332)
chr5 (324-385)||(36838544-36838605)
chr5 (321-374)||(41558648-41558701)
chr5 (319-387)||(6035482-6035549)
chr5 (327-375)||(8420038-8420086)
chr5 (317-349)||(37328834-37328866)
[»] chr3 (8 HSPs)
chr3 (273-378)||(45382751-45382858)
chr3 (316-387)||(16192739-16192810)
chr3 (317-385)||(8039825-8039893)
chr3 (339-390)||(19323460-19323511)
chr3 (331-386)||(28576716-28576771)
chr3 (327-389)||(35990525-35990587)
chr3 (321-386)||(3185242-3185306)
chr3 (333-381)||(27097065-27097113)
[»] chr7 (12 HSPs)
chr7 (317-375)||(6028636-6028694)
chr7 (322-375)||(7328686-7328739)
chr7 (314-375)||(7438717-7438778)
chr7 (321-384)||(31808503-31808566)
chr7 (331-378)||(43160492-43160539)
chr7 (321-375)||(17307904-17307958)
chr7 (317-375)||(24339653-24339711)
chr7 (321-386)||(16341496-16341561)
chr7 (318-387)||(32308119-32308188)
chr7 (323-375)||(12843171-12843223)
chr7 (323-375)||(27945052-27945104)
chr7 (318-386)||(38134397-38134465)
[»] chr2 (4 HSPs)
chr2 (329-375)||(44605141-44605187)
chr2 (327-389)||(31026692-31026754)
chr2 (318-386)||(40681982-40682050)
chr2 (318-386)||(44860320-44860388)
[»] scaffold0349 (1 HSPs)
scaffold0349 (227-272)||(16263-16308)
[»] chr8 (11 HSPs)
chr8 (327-386)||(12985392-12985451)
chr8 (317-375)||(22651987-22652045)
chr8 (227-265)||(29270983-29271021)
chr8 (317-375)||(29447100-29447158)
chr8 (324-378)||(31681827-31681881)
chr8 (323-388)||(31548289-31548354)
chr8 (308-375)||(9382983-9383048)
chr8 (323-386)||(13650755-13650819)
chr8 (323-386)||(13709398-13709462)
chr8 (327-375)||(13844596-13844644)
chr8 (270-310)||(31105813-31105853)
[»] chr4 (7 HSPs)
chr4 (316-375)||(24613690-24613749)
chr4 (317-387)||(35723374-35723445)
chr4 (339-390)||(44796974-44797025)
chr4 (362-400)||(18727855-18727893)
chr4 (314-375)||(4383379-4383439)
chr4 (321-386)||(18513235-18513300)
chr4 (327-387)||(8423718-8423778)
[»] scaffold0123 (1 HSPs)
scaffold0123 (318-374)||(44516-44572)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31290153 - 31290370
Alignment:
Q  1 attctttctcttcaatggagactattacaccgtgaacaaaatgaggatattatatagcttagatagataacttgtagtacaagttatcttagtgtagtac 100  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||           |||||||||||||||||||||||    
T  31290153 attctttctcttctatggagactattacaccatgagcaaaatgaggatattatatagcttagatag-----------tacaagttatcttagtgtagtac 31290241  T
Q  101 tatagagtagtacattctattttactagtacttgtatgctcactatataagctaattttgctcatggtgtaattttgagtcaggttagttgttgttttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290242 tatagagtagtacattctattttactagtacttgtatgctcactatataagctaattttgctcatggtgtaattttgagtcaggttagttgttgttttat 31290341  T
Q  201 cttgcaatatatagtgtttgatactgaca 229  Q
    |||||||||||||||||||||||||||||    
T  31290342 cttgcaatatatagtgtttgatactgaca 31290370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 227 - 411
Target Start/End: Original strand, 31290408 - 31290598
Alignment:
Q  227 acagaaactacatgaggctggaggcacctatattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 326  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290408 acagaaactacatgaggctcgaggcacctgtattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 31290507  T
Q  327 cgacaccgacatatgtaat------tacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtcaatgttaattt 411  Q
     ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31290508 tgacaccgacatatgtaattacgtatacattcatttatgttattttctcaaattactatcggtgtcgacgaatcaatgtcaatgttaattt 31290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 26952498 - 26952546
Alignment:
Q  175 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 223  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26952498 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26952546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 26961991 - 26962039
Alignment:
Q  175 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 223  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26961991 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26962039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 26980289 - 26980337
Alignment:
Q  175 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 223  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  26980289 ttgagtcaggtttgttgttgttttattttgcaatatatagtatttgata 26980337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 2820373 - 2820438
Alignment:
Q  336 catatgtaattacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtca 401  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| ||| |  ||| ||||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaattattattggtatttacatatcaatgtca 2820438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 26649356 - 26649393
Alignment:
Q  175 ttgagtcaggttagttgttgttttatcttgcaatatat 212  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26649356 ttgagtcaggttcgttgttgttttatcttgcaatatat 26649393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 26755324 - 26755361
Alignment:
Q  175 ttgagtcaggttagttgttgttttatcttgcaatatat 212  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26755324 ttgagtcaggttcgttgttgttttatcttgcaatatat 26755361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 27608295 - 27608250
Alignment:
Q  227 acagaaactacatgaggctggaggcacctatattcaattcccaaac 272  Q
    |||||||||||||||||||||| |||||||| || |||||||||||    
T  27608295 acagaaactacatgaggctggatgcacctattttgaattcccaaac 27608250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 27715682 - 27715637
Alignment:
Q  227 acagaaactacatgaggctggaggcacctatattcaattcccaaac 272  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  27715682 acagaaactacatcaggctggatgcacctatattaaattcccaaac 27715637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 5970098 - 5970170
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 389  Q
    ||||||||||||||||| |||| |||||||||| | | |||||| ||||| |||||||| || | ||||||||    
T  5970098 gacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcgac 5970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 15443764 - 15443692
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 389  Q
    |||| |||||| ||||| |||||| |||||| ||| | ||||||||||||||||||||| ||| | |||||||    
T  15443764 gacatcgacacaacaccaacatatataattatattgaattatgttattttctcaaattattattgatgtcgac 15443692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 26058891 - 26058938
Alignment:
Q  227 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 274  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26058891 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26058938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 26078861 - 26078908
Alignment:
Q  227 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 274  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26078861 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26078908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 387
Target Start/End: Complemental strand, 32313474 - 32313403
Alignment:
Q  316 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    |||||||||||||||||| ||| || ||||| |||| | | ||||||||||||||| ||| ||| |||||||    
T  32313474 tgacaccgacacgacacccacacatataattgcattgaatcatgttattttctcaacttattattggtgtcg 32313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 8931591 - 8931649
Alignment:
Q  316 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 374  Q
    |||||||||||||||| ||||| || |||||| | | | ||||||||||||||||||||    
T  8931591 tgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 9195744 - 9195802
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||| |||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9195744 gacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaatta 9195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 9617503 - 9617445
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||  |||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9617503 gacaccgcgacgacaccgacacatataattacattgaattatgtgattttctcaaatta 9617445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 16766766 - 16766708
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 10335378 - 10335427
Alignment:
Q  329 acaccgacatatgtaattacattcatttatgttattttctcaaattacta 378  Q
    ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  10335378 acaccgacacatctgattacattcaattatgtcattttctcaaattacta 10335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 25038061 - 25038130
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    |||||| |||| | |||||||| |||||||||| | | |||||| |||||||||||||| || |||||||    
T  25038061 gacaccaacacaataccgacatttgtaattacactaaattatgtaattttctcaaattattaacggtgtc 25038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 26562758 - 26562701
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 374  Q
    ||||||||||||||| ||||| || |||||||| | | |||||| |||||||||||||    
T  26562758 gacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 26876539 - 26876572
Alignment:
Q  228 cagaaactacatgaggctggaggcacctatattc 261  Q
    ||||||||||||||||||||| ||||||||||||    
T  26876539 cagaaactacatgaggctggatgcacctatattc 26876572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 29449734 - 29449689
Alignment:
Q  333 cgacatatgtaattacattcatttatgttattttctcaaattacta 378  Q
    ||||| |||| |||||||||| |||||||||||||| |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattacta 29449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 34625785 - 34625732
Alignment:
Q  335 acatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 388  Q
    |||||||| |||||||||| |||  | |||||||||||||| ||||||||||||    
T  34625785 acatatgtgattacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 7378038 - 7377978
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    ||||||||||| || |||||||||| | |||||| |||||||||||||  || ||||||||    
T  7378038 cgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcg 7377978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 9025490 - 9025542
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 9025542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 9629442 - 9629394
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9629442 cgacaccgacacatataattacattgaattatgtgattttctcaaatta 9629394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 10760832 - 10760903
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 389  Q
    |||||| |||||||| |||||  ||| |||||||||| | |||| |||||||||||||| |||| ||||||||    
T  10760832 gacaccaacacgacatcgacacgtgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgac 10760903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 20371110 - 20371170
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    ||||||||||| || |||| ||||| | |||||| |||||||||||||| || ||||||||    
T  20371110 cgacaccgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtcg 20371170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 21395298 - 21395365
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 385  Q
    ||||| |||||||||||||||  |||||||||| | | ||||| ||||||||||||||| || ||||||    
T  21395298 gacactgacacgacaccgacacttgtaattacactaaattatg-tattttctcaaattattagcggtgt 21395365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 399
Target Start/End: Complemental strand, 264724 - 264591
Alignment:
Q  268 caaacacttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattt 365  Q
    |||||||||||||| || |||||||| |||| ||||||| |||  || || ||||| ||||||||||| ||| |||| |||||||| |  ||||||| ||    
T  264724 caaacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttcgacactgacacgacaccaacacatgtgattacatttaagtatgttactt 264625  T
Q  366 tctcaaattactatcggtgtcgacaaatcaatgt 399  Q
    ||| |||||| ||| |||| ||||||||||||||    
T  264624 tcttaaattaatattggtgacgacaaatcaatgt 264591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 44482299 - 44482241
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  44482299 gacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 44482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 14332465 - 14332406
Alignment:
Q  329 acaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 389  Q
    |||||||||||||| |||||||| | |||||| |||||||||||||  |||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 23605132 - 23605176
Alignment:
Q  339 atgtaattacattcatttatgttattttctcaaattactatcggt 383  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  23605132 atgtgattacattcaattttgttattttctcaaattactatcggt 23605176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 17080898 - 17080941
Alignment:
Q  344 attacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  17080898 attacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 5376490 - 5376560
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    |||| ||||||||||||||||  | |||||||| | | |||||||||||||| |||||| || ||||||||    
T  5376490 gacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcg 5376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 6427413 - 6427351
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 385  Q
    ||||||||||| ||| || |||||||||| | |||||| |||||||||||||| || ||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 18008612 - 18008642
Alignment:
Q  56 agcttagatagataacttgtagtacaagtta 86  Q
    |||||||||||||||||||||||||||||||    
T  18008612 agcttagatagataacttgtagtacaagtta 18008642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 25361955 - 25361897
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||| |||| || |||||||| | | |||||| ||||||||||||||    
T  25361955 gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaatta 25361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 34712377 - 34712431
Alignment:
Q  321 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||| |||| || |||||||| | | |||||||||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaatta 34712431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 43609825 - 43609871
Alignment:
Q  334 gacatatgtaattacattcatttatgttattttctcaaattactatc 380  Q
    |||| |||| |||||||||| ||||||||||||||||||||| ||||    
T  43609825 gacacatgtgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 21057825 - 21057780
Alignment:
Q  344 attacattcatttatgttattttctcaaattactatcggtgtcgac 389  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  21057825 attacattcaattatgttattttctaaaattattagcggtgtcgac 21057780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 40158412 - 40158456
Alignment:
Q  329 acaccgacatatgtaattacattcatttatgttattttctcaaat 373  Q
    ||||||||| |||| ||| ||||||||||||| ||||||||||||    
T  40158412 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 41877470 - 41877530
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    |||||||||||  |||||||||| | | |||||| |||||||||||||| || ||||||||    
T  41877470 cgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtcg 41877530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 99956 - 99889
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 390  Q
    ||||||||||| ||| || |||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgaca 99889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 22423802 - 22423860
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||||||||||| |||||| ||| | |||||| ||||||||||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaatta 22423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 4991372 - 4991429
Alignment:
Q  322 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatc 380  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||||||||||||    
T  4991372 cgacacgacaccgacacatctaattacatg-atttatgtcattttctcaaattactatc 4991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 38749557 - 38749626
Alignment:
Q  321 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 390  Q
    ||||||| ||||| ||| || |||||||||| | |||||| ||||| |||||||| ||||||||||||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgaca 38749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 16374338 - 16374381
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgttatttt 366  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  16374338 gacacgacaccgacacatgtaattacactgatttatgttatttt 16374381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 3966572 - 3966502
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    ||||| ||||||||||||||| || |||||||| | | || ||| |||||||||||||| || ||||||||    
T  3966572 gacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcg 3966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 18592142 - 18592072
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    |||||||||||||||||| || || |||||||||| | |||||| ||||||| ||| || || ||||||||    
T  18592142 gacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtcg 18592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 21522819 - 21522761
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21522819 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 21533385 - 21533327
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21533385 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 43208270 - 43208332
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 385  Q
    ||||| |||| |||| || | |||||||| | |||||| ||||||||||||||||||||||||    
T  43208270 gacacaacacagacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  324 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 385  Q
    |||||||||||||| || |||||||| | | |||||| |||||||||||||| || ||||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 41558648 - 41558701
Alignment:
Q  321 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 374  Q
    |||||||||||| |||| || |||||||||| | |||||| |||||||||||||    
T  41558648 ccgacacgacactgacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 6035549 - 6035482
Alignment:
Q  319 caccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    ||||||||||||||||||| || |||||||| | | |||| ||| |||||||||||| || ||||||||    
T  6035549 caccgacacgacaccgacaaatataattacactgaattatatta-tttctcaaattattagcggtgtcg 6035482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 8420086 - 8420038
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||  |||||||||||| | |||||||||||| ||||||||    
T  8420086 cgacaccgacacttgtaattacattgaattatgttattttttcaaatta 8420038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 37328834 - 37328866
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattaca 349  Q
    ||||||||||||||||||||| |||||||||||    
T  37328834 gacaccgacacgacaccgacacatgtaattaca 37328866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 378
Target Start/End: Complemental strand, 45382858 - 45382751
Alignment:
Q  273 acttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctca 370  Q
    |||||| || |||||| |||| ||||||| |||| |||  || | ||||||| ||| | ||||||||||||| ||||||||||  ||||||||||||| |    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttctta 45382759  T
Q  371 aattacta 378  Q
    ||||||||    
T  45382758 aattacta 45382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 16192739 - 16192810
Alignment:
Q  316 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    |||||||||||||||| | ||| || |||||||| | | ||||||||||||||||||||| || ||||||||    
T  16192739 tgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 8039825 - 8039893
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 385  Q
    ||||||||||||||||||||| || |||||||| | | |||| | |||||||||||||| || ||||||    
T  8039825 gacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 19323460 - 19323511
Alignment:
Q  339 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 390  Q
    |||| |||| ||||| |||||| ||||||||||||||||||| |||||||||    
T  19323460 atgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgaca 19323511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 28576771 - 28576716
Alignment:
Q  331 accgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||| || |||||||    
T  28576771 accgacacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 35990525 - 35990587
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 389  Q
    |||||| |||| ||||  ||||||||| |||| |||||||||||||||| |||| ||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgac 35990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 3185242 - 3185306
Alignment:
Q  321 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    |||||||||||| |||| ||||||||||||||| ||||| ||| |||| |||||| ||||| ||||    
T  3185242 ccgacacgacactgacacatgtaattacattcaattatg-tatcttctgaaattattatcgatgtc 3185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 27097065 - 27097113
Alignment:
Q  333 cgacatatgtaattacattcatttatgttattttctcaaattactatcg 381  Q
    |||||||| |||||| ||| | |||||| ||||||||||||||||||||    
T  27097065 cgacatatataattaaattgaattatgtaattttctcaaattactatcg 27097113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 6028694 - 6028636
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||||| || ||||||||    
T  6028694 gacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaatta 6028636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 7328686 - 7328739
Alignment:
Q  322 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||| || |||||||| | | |||||||||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaatta 7328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 7438778 - 7438717
Alignment:
Q  314 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||||||| ||||||||||  |||||||||||| | |||||| ||||| ||||||||    
T  7438778 tttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 31808503 - 31808566
Alignment:
Q  321 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtg 384  Q
    ||||||||||||| ||| |||| |||||||| | || ||| |||||||||||||| ||||||||    
T  31808503 ccgacacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 43160539 - 43160492
Alignment:
Q  331 accgacatatgtaattacattcatttatgttattttctcaaattacta 378  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattacta 43160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 17307958 - 17307904
Alignment:
Q  321 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||||||| ||| || |||||||| | | |||||||||||||||||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 24339711 - 24339653
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 386
Target Start/End: Complemental strand, 16341561 - 16341496
Alignment:
Q  321 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    |||||||||||||| || || |||||||| | | |||||| |||||||||||||| |||| |||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatcagtgtc 16341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 32308188 - 32308119
Alignment:
Q  318 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    ||||||||||||||| |||| ||  ||||||| | | |||||| |||||||||||||| || ||||||||    
T  32308188 acaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcg 32308119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 12843171 - 12843223
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||| |||| ||||||||||||| | |||||| ||||| ||||||||    
T  12843171 gacacgacactgacacatgtaattacattgaattatgtaattttatcaaatta 12843223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 27945104 - 27945052
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||  |||||||||| | | |||||| ||||||||||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattatgtaattttctcaaatta 27945052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 38134397 - 38134465
Alignment:
Q  318 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    ||||| ||| || ||||||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  38134397 acacccacatgagaccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 44605141 - 44605187
Alignment:
Q  329 acaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  44605141 acaccgacacatgtaattacattgaattatgttattttctcaaatta 44605187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 31026754 - 31026692
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 389  Q
    |||||||||||||| | |||||||| | |||||| ||||||| |||||| ||||||| |||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggtctcgac 31026692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 40682050 - 40681982
Alignment:
Q  318 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    ||||| ||||||||  ||||  || ||||||||| | |||||| |||||||||||||| ||||||||||    
T  40682050 acaccaacacgacattgacacgtgcaattacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 44860388 - 44860320
Alignment:
Q  318 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    ||||| |||||||||||||| || |||||||| | | |||||  |||||||||||||| || |||||||    
T  44860388 acaccaacacgacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 16263 - 16308
Alignment:
Q  227 acagaaactacatgaggctggaggcacctatattcaattcccaaac 272  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  16263 acagaaactacatcaggctggatgcacctatattaaattcccaaac 16308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 386
Target Start/End: Complemental strand, 12985451 - 12985392
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    |||||||||||||| | |||||||| | |||||| |||||||||||||| ||| ||||||    
T  12985451 cgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 22652045 - 22651987
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||||||||||||||  |||||||| ||| | |||||| ||||| ||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta 22651987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 29271021 - 29270983
Alignment:
Q  227 acagaaactacatgaggctggaggcacctatattcaatt 265  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29271021 acagaaactacatgagactggatgcacctatattcaatt 29270983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 29447100 - 29447158
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    |||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  29447100 gacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaatta 29447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 31681827 - 31681881
Alignment:
Q  324 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattacta 378  Q
    |||||||||||||| |||| ||| |||||| |||||| ||||||| |||||||||    
T  31681827 acacgacaccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 31548289 - 31548354
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 388  Q
    |||| |||||||||| |||| |||||||| | |||||| ||||| |||||| | ||||||||||||    
T  31548289 gacatgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtcga 31548354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 9383048 - 9382983
Alignment:
Q  308 tgtgtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||| ||||||||||||||||||| |||| |  |||||||||| | ||||||  |||||||||||||    
T  9383048 tgtgtgtttgacaccgacacgacacagacaca--taattacattgaattatgtagttttctcaaatta 9382983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 13650819 - 13650755
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtc 386  Q
    |||||||||||| || ||||| ||||||||||| |  | ||||||||||| ||||||||||||||    
T  13650819 gacacgacaccgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtc 13650755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 13709462 - 13709398
Alignment:
Q  323 gacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtc 386  Q
    |||||||||||| || ||||| ||||||||||| |  | ||||||||||| ||||||||||||||    
T  13709462 gacacgacaccgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtc 13709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 13844596 - 13844644
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||||| || |||||||| ||| |||||| ||||||||||||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaatta 13844644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 31105813 - 31105853
Alignment:
Q  270 aacacttctcattgaaggcgtgtctggtgtccaacatgtgt 310  Q
    |||||||| ||||||||  ||||||||||||||||||||||    
T  31105813 aacacttcacattgaagatgtgtctggtgtccaacatgtgt 31105853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 24613690 - 24613749
Alignment:
Q  316 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  24613690 tgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaatta 24613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 35723374 - 35723445
Alignment:
Q  317 gacaccgacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtcg 387  Q
    |||||||| ||||||| |||| || |||||||||| | |||||| ||||||||||||||| || ||||||||    
T  35723374 gacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcg 35723445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 44796974 - 44797025
Alignment:
Q  339 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 390  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||| ||||    
T  44796974 atgtaattacattgaattatgttattttctcaaattattgtcggtgttgaca 44797025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 18727893 - 18727855
Alignment:
Q  362 attttctcaaattactatcggtgtcgacaaatcaatgtc 400  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  18727893 attttctcaaattactattggtgttgacaaatcaatgtc 18727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 4383439 - 4383379
Alignment:
Q  314 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 375  Q
    ||||||||||||||||||| ||||| |||||||||| | | |||||| ||||| ||||||||    
T  4383439 tttgacaccgacacgacactgacatttgtaattacactgaattatgtgatttt-tcaaatta 4383379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 18513235 - 18513300
Alignment:
Q  321 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 386  Q
    ||||||| |||| |||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 8423718 - 8423778
Alignment:
Q  327 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 387  Q
    |||||||||||| | |||||||| | | |||||| |||||||||||||| || ||||||||    
T  8423718 cgacaccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtcg 8423778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 44516 - 44572
Alignment:
Q  318 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 374  Q
    |||||||||||| ||||||| || |||||||| | | |||||| |||||||||||||    
T  44516 acaccgacacgataccgacacatataattacactgaattatgtgattttctcaaatt 44572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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