View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11103_low_9 (Length: 279)
Name: NF11103_low_9
Description: NF11103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11103_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 52767284 - 52767544
Alignment:
| Q |
1 |
ttcttgatgataagggcattcttcaatgacattgtatattgactttgaaggctttaaggatcacaaattctgtcattgaagaagtgaaagaaagcttaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52767284 |
ttcttgatgataagggcattcttcaatgacattgtatattgactttgaaggctttaaggatcacaaattctgtcattgaagaagtgaaagaaagcttaga |
52767383 |
T |
|
| Q |
101 |
tttgttcccaactagtggaacattagatatgatttgagaaaatataggatttccaaggagtgattttctttttgatcctgaaattttttctagcagacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52767384 |
tttgttcccaactagtggaacattagatatgatttgagaaaatataggatttccaaggagtgattttctttttgatcctgaaattttttctagcagacca |
52767483 |
T |
|
| Q |
201 |
aatagcattaataaactaataatggtagatttgatgaccaacttacactaaggtgactaac |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52767484 |
aatagcattaataaactaataatggtagatttgatgaccaacttacactaaggtgactaac |
52767544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University