View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11104_high_2 (Length: 252)
Name: NF11104_high_2
Description: NF11104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11104_high_2 |
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| [»] scaffold1801 (1 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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Alignment Details
Target: scaffold1801 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 492 - 248
Alignment:
| Q |
1 |
actcggtgcaatagacatgttattaatgttac----------ataagtatgcgagttgctaaaatttcacataaatgtaaattcgagataaaaacacaaa |
90 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
492 |
actcggtgcaatagacatgttattaatgttacctgttgtatcataagtatgcgagttgctaaaatttcacataaatgtaaattcgagataaaaacacaaa |
393 |
T |
|
| Q |
91 |
ataacaagagtcaggaatatgtaaattcgtgattaataactcagcctaaatctttacatcatcaaagcagcagttaaaacgacgaca-cagcagatccga |
189 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
392 |
ataacaagagtcaggaatatgtaaattcgtgattaataactcagcctaaatctttacatcatcaaagcagcagttaaaaggacgacagcagcagatccgg |
293 |
T |
|
| Q |
190 |
caactgtaaatctgttcaaagcggcggcagcatttgtggatgtct |
234 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
292 |
caactgtaaatctgttcaaagcggcagcagcgtttgtggatgtct |
248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 3191 - 3296
Alignment:
| Q |
128 |
aactcagcctaaatctttacatcatcaaagcagcagttaaaacgacgaca-cagcagatccgacaactgtaaatctgttcaaagcggcggcagcatttgt |
226 |
Q |
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|||||||||||| ||| ||||||||||||||||| || ||||| |||||| ||||||||||| |||||||||||||||||||||||| | |||| ||||| |
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| T |
3191 |
aactcagcctaactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggtgccagcgtttgt |
3290 |
T |
|
| Q |
227 |
ggatgt |
232 |
Q |
| |
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| |||| |
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|
| T |
3291 |
gaatgt |
3296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 3089 - 3150
Alignment:
| Q |
65 |
atgtaaattcgagataaaaacacaaaataacaagagtcaggaatatgtaaattcgtgattaa |
126 |
Q |
| |
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||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3089 |
atgtaaattcgtgatagaaaaacataataacaagagtcaggaatatgtaaattcgtgattaa |
3150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 678 - 576
Alignment:
| Q |
128 |
aactcagcctaaatctttacatcatcaaagcagcagttaaaacgacgaca-cagcagatccgacaactgtaaatctgttcaaagcggcggcagcatttgt |
226 |
Q |
| |
|
||||| || ||| ||| |||||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||||||| || |||||| ||||| |
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|
| T |
678 |
aactctgcgtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggtggcagcgtttgt |
579 |
T |
|
| Q |
227 |
gga |
229 |
Q |
| |
|
||| |
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|
| T |
578 |
gga |
576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 788 - 726
Alignment:
| Q |
65 |
atgtaaattcgagataaaaaca-caaaataacaagagtcaggaatatgtaaattcgtgattaa |
126 |
Q |
| |
|
|||||||||| ||||||||| | || ||||||||||||||||| |||||||| |||||||||| |
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| T |
788 |
atgtaaattccagataaaaaaaacataataacaagagtcaggattatgtaaactcgtgattaa |
726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 459 - 369
Alignment:
| Q |
128 |
aactcagcctaaatctttacatcatcaaagcagcagttaaaacgacgaca-cagcagatccgacaactgtaaatctgttcaaagcggcggc |
217 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| | ||||| |||||| ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
459 |
aactcagcctaactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggc |
369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 14248135 - 14248237
Alignment:
| Q |
128 |
aactcagcctaaatctttacatcatcaaagcagcagttaaaacgacgaca-cagcagatccgacaactgtaaatctgttcaaagcggcggcagcatttgt |
226 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||| ||||| |||||| ||| ||||||| |||||||||||||||||||||||||||| || ||||| |
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| T |
14248135 |
aactaagcctaactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcggcgtttgt |
14248234 |
T |
|
| Q |
227 |
gga |
229 |
Q |
| |
|
||| |
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|
| T |
14248235 |
gga |
14248237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 14253945 - 14254033
Alignment:
| Q |
128 |
aactcagcctaaatctttacatcatcaaagcagcagttaaaacgacgaca-cagcagatccgacaactgtaaatctgttcaaagcggcg |
215 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
14253945 |
aactcagtctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcg |
14254033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 14316673 - 14316761
Alignment:
| Q |
128 |
aactcagcctaaatctttacatcatcaaagcagcagttaaaacgacgaca-cagcagatccgacaactgtaaatctgttcaaagcggcg |
215 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||||||| ||||| |||||| ||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
14316673 |
aactaagcctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcg |
14316761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 14316581 - 14316632
Alignment:
| Q |
65 |
atgtaaattcgagataaaaacacaaaataacaagagtcaggaatatgtaaatt |
117 |
Q |
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|
||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
14316581 |
atgtaaattcgtaataaaaa-acaaaataacaagagtcaggaatatgtaaatt |
14316632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 14248037 - 14248088
Alignment:
| Q |
65 |
atgtaaattcgagataaaaacacaaaataacaagagtcaggaatatgtaaatt |
117 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||||||||| ||||||| |
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|
| T |
14248037 |
atgtaaattcgtgataaaaaaa-aaaataacaagagtcaggaataagtaaatt |
14248088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 37252975 - 37253011
Alignment:
| Q |
178 |
cagcagatccgacaactgtaaatctgttcaaagcggc |
214 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||| |
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|
| T |
37252975 |
cagcagatccggcaacggtaaatctgttcaaagcggc |
37253011 |
T |
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