View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11105_high_10 (Length: 465)
Name: NF11105_high_10
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 42960355 - 42959918
Alignment:
| Q |
18 |
aatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatc |
117 |
Q |
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| T |
42960355 |
aatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatc |
42960256 |
T |
|
| Q |
118 |
gctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960255 |
gctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaa |
42960156 |
T |
|
| Q |
218 |
caacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960155 |
caacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcac |
42960056 |
T |
|
| Q |
318 |
tatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaat |
417 |
Q |
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| T |
42960055 |
tatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaat |
42959956 |
T |
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| Q |
418 |
cgccgggaacaaatcctcaagctactgtcatgatgatg |
455 |
Q |
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| T |
42959955 |
cgccgggaacaaatcctcaagctactgtcatgatgatg |
42959918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 455
Target Start/End: Original strand, 5504394 - 5504817
Alignment:
| Q |
32 |
aggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaagga |
131 |
Q |
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|||||| ||||| ||| ||||||| |||||| |||| || ||||||||||||||||||||||||||||| || |||||| | | ||||| |||||||| |
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| T |
5504394 |
aggtgagctcaagttggtcaacaccaatgtgaatgaaaatcctgctgttaccttcaactacttcagtcatccatacgatttaaagcgctgcgtcgaaggg |
5504493 |
T |
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| Q |
132 |
atccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaacaacactgtgaagg |
231 |
Q |
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| T |
5504494 |
atcagcatggccattaaagtagtccagtcagaacacttcacaaactacacattatgtaaaagagaaaccgcagagagacttcttaaccttagtgtgaaga |
5504593 |
T |
|
| Q |
232 |
ctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcactatcatggtggatg |
331 |
Q |
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| T |
5504594 |
ctactgtcaacttcataccaaaacatgccaatgacacatcttccctagagcagttctgcaaagacactgtcatcacaatttggcattaccatggtggatg |
5504693 |
T |
|
| Q |
332 |
ccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaatcgccgggaacaaat |
431 |
Q |
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| T |
5504694 |
tcatgtgggaaaggtagttagccctgattataaggttcttgacgttgacagactccgagtcgtcgatggttcaacgtttactgaatcaccaggaacaaat |
5504793 |
T |
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| Q |
432 |
cctcaagctactgtcatgatgatg |
455 |
Q |
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|||||||| ||||| ||||||||| |
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| T |
5504794 |
cctcaagccactgtgatgatgatg |
5504817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
| Q |
279 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
328 |
Q |
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||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
3094265 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
3094314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
| Q |
279 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
328 |
Q |
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||||| |||||||||||||||||||| || || ||||| ||||||||||| |
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| T |
3085419 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
3085468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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