View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11105_high_11 (Length: 462)
Name: NF11105_high_11
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 5173816 - 5174261
Alignment:
| Q |
1 |
aagaaatagagtcataaaataaacaaatttgataattttaaccatatttttctt---attttgaatgtaaagtaaaatacaatttgacctatttatagtg |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
5173816 |
aagaaatagagtcataaaataaacaaatttgataattttaaccatatttttctttttattttgaatgaaaagtaaaatacgattttacctatttatagtg |
5173915 |
T |
|
| Q |
98 |
tataaggtccatattgttctaaaaacgattaaagagatttt-aatacatgagaaagatgtaaagaaccatttctaaaattagaatcatcattttattcat |
196 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173916 |
tataaggtccatattgttctaaaaacaattaaagagttttttaatacatgagaaagatgtaaagaaccatttctaaaattagaatcatcattttattcat |
5174015 |
T |
|
| Q |
197 |
agaaaaatcattaataaatgtctcttaagtaggtcaaagtgttgtatttgtctcttttaacacacttaataacaagtttatatnnnnnnnttctaaccat |
296 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
5174016 |
agaaaaatcattaataaatgtctcttaagtaggtcaaagtgttgtatttgtct-ttttaacacacttaataacaagtttatataaaaaaaatctaaccat |
5174114 |
T |
|
| Q |
297 |
agacatacattctcattcaactacctttctttattattttatcatttcataagaatccgacaattgaaaactaatttctttaaattctcac-ttttttac |
395 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5174115 |
agacatacattctcattgaactacctttctttattattttatcatttcataagaacccgacaattgaaaactaatttctttaaattctcacattttttac |
5174214 |
T |
|
| Q |
396 |
tatttaaaattctttcacataaaaaatatattattttattaatgtttgatt |
446 |
Q |
| |
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|
| T |
5174215 |
tatttaaaattctttcacataaaaa----attattttcttaatgtttgatt |
5174261 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 17224922 - 17224973
Alignment:
| Q |
202 |
aatcattaataaatgtctcttaagtaggtcaaagtgttgtatttgtctcttt |
253 |
Q |
| |
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|
| T |
17224922 |
aatcattagtaaaagtctcttaagtagatcaatgtgttgtatttgtcccttt |
17224973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 29254562 - 29254499
Alignment:
| Q |
204 |
tcattaataaatgtctcttaagtaggtcaaagtgttgtatttgtctcttttaacacacttaataa |
268 |
Q |
| |
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|||||| ||||||||||||||| | ||||| ||||| | |||||| | ||||||||||||||||| |
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| T |
29254562 |
tcattattaaatgtctcttaagcaagtcaatgtgttatgtttgtc-catttaacacacttaataa |
29254499 |
T |
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