View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11105_high_15 (Length: 394)
Name: NF11105_high_15
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 2336172 - 2335804
Alignment:
| Q |
1 |
atatttgagttgaaaccatggtcattttggtgtcttgcattatttgaattgaaaccatga-----aaccatggtcccactgaagagtacatgaaacacaa |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2336172 |
atatttgagttgaaaccatggtcattttggtatct-gcatcatttgaattgaaaccatgagttgaaaccatggtcccactgaagagtacatgaaacacaa |
2336074 |
T |
|
| Q |
96 |
ccttacattatattttttgtgttaatttttcagagttatttccatcaggtcttggaaatgccctaatgcaagcaactgagaacatcaacaagctatttaa |
195 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2336073 |
ccttacattatatttt--gtgttaatttttcagagttatttccatcaggtcttggaaatgccctaatgcaagtaactgagaacatcaacaagctatttaa |
2335976 |
T |
|
| Q |
196 |
caacatgaatttgacaccatggtcattaagtggacgtgtgaaagaaagtgacaaccactataaactgaaatatgacatgccaggaatccctaaagagaat |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2335975 |
caacatgaatttgacaccatggtcattaagtggacgtgtgaaagaaagtgacaaccactataaactgaaatatgacatgccaggaatccctaaagagaat |
2335876 |
T |
|
| Q |
296 |
gtgaacataacaattggtgatggagtgttgacaataaagggagaacacaaggaagagaaagaaggaggaggg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2335875 |
gtgaacataacaattggtgatggagtgttgacaataaagggagaacacaaggaagagaaagaaggaggaggg |
2335804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University