View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11105_high_17 (Length: 325)
Name: NF11105_high_17
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 28911561 - 28911272
Alignment:
| Q |
23 |
atacattcatctcaaagatatacagtcagttcagcttatcactatacttcacagcttcaaaacacgttccaactaaagattcttcagacatcatttggca |
122 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
28911561 |
atacattcatctcaaagatatacagtcagctcagcttatcactatacttcacagcttcaaaacactttccaactgaagattcttcagacatcatttggca |
28911462 |
T |
|
| Q |
123 |
caaggcgtttcctttaaaaacaagtctcattgtttggcgtcttctacataatcgggttcctacttctgataatttattgcagcggggacttctttaaaat |
222 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28911461 |
caaggcggttcctttaaaaataagtctcattgtttggcgtcttctacataatcgggttcctacttctgataatttattgcagcggggacttcttcaaaat |
28911362 |
T |
|
| Q |
223 |
caacgacagctctgagtgggtggttgcagctctaatgaagacattgatcatctatttttacattgtaatttctttcgaacaatttggtct |
312 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
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| T |
28911361 |
caacgacagctctgagtgggtggttgcggctctaatgaagacattgatcatctatttttgcattgtaattcctttggaacaatttggtct |
28911272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 11433031 - 11433201
Alignment:
| Q |
21 |
atatacattcatctcaaagatatacagtcagttcagcttatcactatacttcacagcttcaaaacacgttccaactaaagattcttcagacatcatttgg |
120 |
Q |
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|||| ||||||||||| |||||| | |||||||||||||||||| ||| | ||||| ||| ||||| ||||| ||||||||||| |||||||||| |
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| T |
11433031 |
atattcattcatctcagtgatatagatgcagttcagcttatcacta--cttgatagctttgaaaaacgttacaacttaagattcttcatacatcatttga |
11433128 |
T |
|
| Q |
121 |
cacaaggcgtttcctttaaaaacaagtctcattgtttggcgtcttctacataatcgggttcctacttctgataat |
195 |
Q |
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| T |
11433129 |
cataaggcggttccttt--aaatcagtctctttgtatggcgtcttcttcataattatattcctacttctgataat |
11433201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 32153517 - 32153390
Alignment:
| Q |
20 |
catatacattcatctcaaagatatacagtcagttcagcttatcactatacttcacagcttcaaaacacgttccaactaaagattcttcagacatcatttg |
119 |
Q |
| |
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||||||||||||||||||||||||| ||||| | | |||||||||| ||| ||| |||| ||| ||||| || || |||| |||||| |||||||||| |
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| T |
32153517 |
catatacattcatctcaaagatataatgtcagcttaacttatcacta--cttgacaacttcgaaaaacgttacatctcaagaatcttcaaacatcatttg |
32153420 |
T |
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| Q |
120 |
gcacaaggcgtttcctttaaaaacaagtct |
149 |
Q |
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||| |||| | |||||||||||| |||||| |
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|
| T |
32153419 |
gcataaggtggttcctttaaaaataagtct |
32153390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 15988090 - 15988190
Alignment:
| Q |
212 |
ttctttaaaatcaacgacagctctgagtgggtggttgcagctctaatgaagacattgatcatctatttttacattgtaatttctttcgaacaatttggtc |
311 |
Q |
| |
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||||| ||||||| | ||| ||||| ||||| ||||||| ||||||||| | ||| ||||||| ||||| |||| ||| |||||| ||||||||||||| |
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| T |
15988090 |
ttcttcaaaatcatcaacaactctgtgtgggaggttgcaactctaatgagaatattaatcatctgtttttgcattttaacttctttggaacaatttggtc |
15988189 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
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|
| T |
15988190 |
t |
15988190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 30492366 - 30492484
Alignment:
| Q |
179 |
ttcctacttctgataatttattgcagcggggacttctttaaaatcaacgacagctctgagtgggtggttgcagctctaatgaagacattgatcatctatt |
278 |
Q |
| |
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|||||||||| ||| ||||||| ||| ||||||||| ||||||||| ||| || || |||||||||||| ||| |||||| || || ||||||| || |
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| T |
30492366 |
ttcctacttcatgtaacttattgcggcgtggacttcttcaaaatcaacaacatctttgtgtgggtggttgcggctgtaatgaggatatcaatcatctgtt |
30492465 |
T |
|
| Q |
279 |
tttacattgtaatttcttt |
297 |
Q |
| |
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|| |||||||| |||||| |
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| T |
30492466 |
ttcgcattgtaacttcttt |
30492484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 17598273 - 17598323
Alignment:
| Q |
92 |
caactaaagattcttcagacatcatttggcacaaggcgtttcctttaaaaa |
142 |
Q |
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||||| |||| |||||| |||||||||||||||||||| |||| ||||||| |
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| T |
17598273 |
caactcaagaatcttcaaacatcatttggcacaaggcggttccgttaaaaa |
17598323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 312
Target Start/End: Complemental strand, 38424177 - 38424044
Alignment:
| Q |
179 |
ttcctacttctgataatttattgcagcggggacttctttaaaatcaacgacagctctgagtgggtggttgcagctctaatgaagacattgatcatctatt |
278 |
Q |
| |
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|||||||||| |||| ||||||| | | | ||||||| ||||||||| || || || |||||||||||| |||||||| | || | | |||||||||| |
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| T |
38424177 |
ttcctacttcatataacttattgccgtgtgaacttcttcaaaatcaacatcaactttgtgtgggtggttgcggctctaattaggataataatcatctatt |
38424078 |
T |
|
| Q |
279 |
tttacattgtaatttctttcgaacaatttggtct |
312 |
Q |
| |
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||| |||||| | | |||| || ||||||||||| |
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| T |
38424077 |
tttgcattgtcactactttggatcaatttggtct |
38424044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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