View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11105_high_2 (Length: 853)
Name: NF11105_high_2
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 43075178 - 43075606
Alignment:
| Q |
13 |
agcagagaggtacagaagagaatgaaagtgaaaatggtgtgaaagggaagaaggaatggaccactgaaaaaatgatgggagatttaaagcaaagataaga |
112 |
Q |
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| T |
43075178 |
agcagagaggtacagaagagaatgaaagtgaaaatggtgtgaaagggaagaaggaatggaccactgaaaaaatgatgggagatttaaagcaaagataaga |
43075277 |
T |
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| Q |
113 |
aagaaggaacaatcctcaaagagtatagagagtgagtacaaatatggttctgttctgatgagttga--gannnnnnnnnnnntgacagagacatggcaag |
210 |
Q |
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| T |
43075278 |
aagaaggaacaatcctcaaagagtatagagagtgagtacaaatatggttctgttctgatgagttgagtgtgtgtgtgtgtgttgacagagacatggcaag |
43075377 |
T |
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| Q |
211 |
aagaaaacacagaaccgtattaattgttattattgttgtcataaacttttcaaaatatagacatttttatttctcacannnnnnnagactcaattttgtc |
310 |
Q |
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| T |
43075378 |
aagaaaacacagaaccgtattaattgttattattgttgtcataaacttttcaaaatatagacatttttatttctcacatttttttagactcaattttgtc |
43075477 |
T |
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| Q |
311 |
tccacaaaaacaactaaattagtcatttacatgatgataaattaatcttcaatttattataatatataaagaccaatttatagtataaaaatatcataca |
410 |
Q |
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| T |
43075478 |
tccacaaaaacaactaaattagtcatttacatgatgataaattaat----------------agtataaagaccaatttatagtataaaaatatcataca |
43075561 |
T |
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| Q |
411 |
ctctaatttgagtgttannnnnnngagaaataatattaaaacaacag |
457 |
Q |
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| T |
43075562 |
--ctaatttgagtgttatttttttgagaaataatattaaaacaacag |
43075606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 563 - 853
Target Start/End: Original strand, 43076044 - 43076333
Alignment:
| Q |
563 |
ttgttattcaaataacacaactctannnnnnnnataagctgacgagtccacatgttttaacgcaagtgattaaaatatataaatcgttaggcatatcgtg |
662 |
Q |
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| T |
43076044 |
ttgttattcaaataacacaactctattttttt-ataagctgacgagtccacatgttttaacgcaagtgattaaaatatataaatcgttaggcatatcgtg |
43076142 |
T |
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| Q |
663 |
atcgacgtttgaactttaaacactttacttatatgagttttttgaactttaaacactctactttatacataagtttaaacgattatttatcattccgtat |
762 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
43076143 |
atcgacgtttgaactttaaacactttacttatatgagttttttgaacttcaaacactctactttatacatgagtttaaacgattatttatcattctgtat |
43076242 |
T |
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| Q |
763 |
attnnnnnnntaaagctcttataagagaccatttacaacaatttggtcatctatacattttatcaaagagaaatgatatttgtacaatcat |
853 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
43076243 |
tttaaaaaaataaagctcttataagagaccatttacaacaatttggccatctatacattttatcaaagtgaaatgatatttgtataatcat |
43076333 |
T |
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