View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11105_high_20 (Length: 321)
Name: NF11105_high_20
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 561937 - 561838
Alignment:
| Q |
133 |
tgacacaacaaattgtactccctcactacaaatgctaaaaggattgtgga--ggggccaaaattgcagggtttgttgtgtttttagcaaaatggaaagag |
230 |
Q |
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| T |
561937 |
tgacacaacaaattgtactccctcactacaaatgctaaaaggattgtggagtggggccaaaattgcagggtttgttgtgtttttagcaaaatggaaagag |
561838 |
T |
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Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 562065 - 561971
Alignment:
| Q |
39 |
ttctctttcattcttgttctcctannnnnnnctgcaaagcttgctctctcttctgatatcttgttcatagatatactcacaaatttggtcaagat |
133 |
Q |
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| T |
562065 |
ttctctttcattcttgttctcctatttttttctgcaaagcttgctctctcttctgatatcttgttcatagatatactcacaaatttggtcaagat |
561971 |
T |
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