View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11105_high_7 (Length: 530)
Name: NF11105_high_7
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 3 - 417
Target Start/End: Original strand, 32089521 - 32089944
Alignment:
| Q |
3 |
ctataaagagagccaaagtatgttaagggaaaggatttatgttgctttgccacacaggatacaagagtgtgatcctctatttaaactaaagctggagtgt |
102 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32089521 |
ctataaagagagccaaagtatgttaagggaaagggtttatgttgctttgccacacaggatacaagagtgtgatcctctatttaaactaaagctggagtgt |
32089620 |
T |
|
| Q |
103 |
ccctttccctatttttcataatgattcactcacaatttgtgtcttactcgatgcttagtgctgcagttaatttttaagcaagttaaaagattaaatatcc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32089621 |
ccctttccctatttttcataatgattcactcacaatttgtgtcttactcgatgcttagtgctgcagttaatttttaagcaagttaaaagattaaatatcc |
32089720 |
T |
|
| Q |
203 |
actaaaacaaaatcttacgcatccataagagtcttcatctttcacatatgaattaccttctaattacatctccaagtc---------gatgcagtttact |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32089721 |
actaaaacaaaatcttacgcatccataagagtcttcatctttcacatatgaattaccttctaattacatctccaagtcgatgcaattgatgcagtttact |
32089820 |
T |
|
| Q |
294 |
acaacagctgcatcagattttacactgaccctttggagttttaagtcctttgcttttaggaatcaccatctcaatcccaatgcttcagcaagcacagctt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32089821 |
acaacagctgcatcagattttacactgaccctttggagttttaagtcctttgcttttaggaatcaccatctcaatcccaatgcttcaacaagcacagctt |
32089920 |
T |
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| Q |
394 |
caactgtcataggctcccaatggg |
417 |
Q |
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| T |
32089921 |
caactgtcataggctcctaatggg |
32089944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 58 - 277
Target Start/End: Original strand, 32095476 - 32095696
Alignment:
| Q |
58 |
aggatacaagagtgtgatcctctatttaaactaaagctggagtgtccctttccctatttttcataatgattcactcacaatttgtgtcttactcgatgct |
157 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||| ||||||| ||||||||||||| ||||| |
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| T |
32095476 |
aggatacaagagtgtgatcctctatttatactaaagctggagagtccctttgcctatttttcatactgattcgctcacaacttgtgtcttactcaatgct |
32095575 |
T |
|
| Q |
158 |
tagtgctgcagttaatttttaagcaagttaaaagattaaatatccactaaaacaaaatcttacgcatccataagagtcttcatctttcac-atatgaatt |
256 |
Q |
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||||||| || | ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||| |
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| T |
32095576 |
tagtgctccactcaatttttaagcaagttacaagattaaatattcactaaaacaaaatcttacacattcataagagtcttcgtctttcactttatgaatt |
32095675 |
T |
|
| Q |
257 |
accttctaattacatctccaa |
277 |
Q |
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||||||||||||||||||||| |
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| T |
32095676 |
accttctaattacatctccaa |
32095696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 32091605 - 32091641
Alignment:
| Q |
483 |
gaattgcatctgagtctgcacaggttaaccatttcat |
519 |
Q |
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| T |
32091605 |
gaattgcatctgagtctacacaggttaaccatttcat |
32091641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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