View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11105_low_12 (Length: 454)
Name: NF11105_low_12
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 16845633 - 16845207
Alignment:
| Q |
7 |
aaagttaagacacgatggatggtgcttaatttttgtttttataatcacaaacttgattataaaaataataattagcaatagttatacgtagatttatgag |
106 |
Q |
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| T |
16845633 |
aaagttaagacacgatggatggtgcttaatttttgtttttatagtcacaaacttgattataaaaataataattagcaacagttatacgtagatttatgag |
16845534 |
T |
|
| Q |
107 |
gtttaagaagagtcgatagattggagataaactatgtgggttaaatgaaagctcagtataattaaaaagagacaataaaaggttaggtgagtttgtgttt |
206 |
Q |
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| T |
16845533 |
gtataacaagggtcaatagattggagataaactatgtgggttaaatgaaagctcaatataattaaaaagagacaa-aaaaggttaggtgagtttgtgttt |
16845435 |
T |
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| Q |
207 |
ggtgatcaaagtcagaaagagagttaaaacttaaactgacatgagtgtaaatatttattgaatcagtgaattgatgaatgtaataaatgagtactgcata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16845434 |
ggtgatcaaagtcagaaagagagttaaaacttaaactgacatgaatgtaaatatttattgaatcagtgaattgatgaatgtaatagatgagtactgcata |
16845335 |
T |
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| Q |
307 |
tgccgtatatatactacagtaaagtaattattgattgaaagtgaaggtgggagttatgattttctgagtgagtgaatgtgtgtggggctgtgaattgtga |
406 |
Q |
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| T |
16845334 |
tgccgtatatatactacagtaaagtaattattgattgaaagtgaaggtgggagttatgattttctgagtgagtgaatgtgtgtggggctgtgaattgtga |
16845235 |
T |
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| Q |
407 |
gggtggtgggggtggaaatatactgact |
434 |
Q |
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| T |
16845234 |
gggtggtgggggtggaaatgtactgact |
16845207 |
T |
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