View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11105_low_15 (Length: 420)
Name: NF11105_low_15
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 20921777 - 20922171
Alignment:
| Q |
11 |
agaagcagagaatgtagtaaagtgttaaagagttgtatattttcagtcgatggatctgcttgcacatttgttttgaaatccaaaagagtgactatattga |
110 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20921777 |
agaagaagagaatgtagtaaagtgttaaggagttgtatattttcagtcgatggatctgcttgcacatttgttttgaaatccaaaagagtgactatattga |
20921876 |
T |
|
| Q |
111 |
ctggactgaattgtggaaaccgaggctgtcccagaatagaacgtaagtatgaatacaactacgtacaagaatggattagatggagttaagtctcaaaccg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20921877 |
ctggactgaattgtggaaaccgaggctgtcccagaatagaacgtaagtatgaatacaactacgtacaagaatggattagatggagttaagtctcaaaccg |
20921976 |
T |
|
| Q |
211 |
tcaagttattagtatatctccaaaggaaaatgtgataactagaagtgactcctcggtgatataagttggtgtttcaaagcagcatgtagaatgaagttaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20921977 |
tcaagttattagtatatctccaaaggaaaatgcgataactagaagtgactcctcggtgatataagttggtgtttcaaagcagcatgtagaatgaagttaa |
20922076 |
T |
|
| Q |
311 |
cctccttgttattagcatgtaagtcggaagacttaattcttctagaaccgtaggagaagtgagtttggataaatggtagtaatcagattgaaaat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20922077 |
cctccttgttattagcatgtaagtcggaagacttaattcttctagaaccataggagaagtgagtttggataaatggtagtaatcagattgaaaat |
20922171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 24533380 - 24533285
Alignment:
| Q |
119 |
aattgtggaaaccgaggctgtcccagaatagaacgtaagtatgaatacaactacgtacaagaatggattagatggagttaagtctcaaaccgtcaag |
215 |
Q |
| |
|
||||||||||| | ||| ||||||| || ||| ||||||| |||||| ||||||| |||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
24533380 |
aattgtggaaagc-aggttgtcccataagagaccgtaagtgtgaatataactacggacaagaatggattaattggaagtaagtctcaaaccatcaag |
24533285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University