View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11105_low_28 (Length: 238)

Name: NF11105_low_28
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11105_low_28
NF11105_low_28
[»] chr4 (3 HSPs)
chr4 (1-224)||(30775657-30775877)
chr4 (49-144)||(9335479-9335574)
chr4 (42-144)||(35132931-35133033)
[»] chr2 (7 HSPs)
chr2 (46-217)||(16661577-16661748)
chr2 (46-172)||(7542683-7542809)
chr2 (46-144)||(12235174-12235272)
chr2 (42-144)||(16657098-16657200)
chr2 (46-170)||(11999853-11999977)
chr2 (46-109)||(43625930-43625993)
chr2 (46-144)||(12258166-12258264)
[»] chr7 (15 HSPs)
chr7 (46-170)||(8667878-8668002)
chr7 (48-144)||(8671217-8671313)
chr7 (46-161)||(8585291-8585406)
chr7 (46-222)||(13333041-13333217)
chr7 (46-170)||(8628991-8629115)
chr7 (46-206)||(10493959-10494119)
chr7 (46-144)||(8654935-8655033)
chr7 (46-170)||(3147731-3147855)
chr7 (50-212)||(17268356-17268518)
chr7 (53-172)||(17260698-17260817)
chr7 (46-144)||(6789997-6790095)
chr7 (46-224)||(27830460-27830638)
chr7 (49-144)||(8659848-8659943)
chr7 (49-170)||(1301923-1302044)
chr7 (46-123)||(7877318-7877395)
[»] chr1 (3 HSPs)
chr1 (46-197)||(34466378-34466529)
chr1 (46-113)||(52549105-52549172)
chr1 (77-144)||(15595524-15595588)
[»] chr5 (1 HSPs)
chr5 (46-197)||(28220383-28220534)
[»] chr8 (1 HSPs)
chr8 (46-197)||(43745279-43745430)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30775877 - 30775657
Alignment:
Q  1 acagaatttactattaatattacannnnnnncagatgctaataaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgt 100  Q
    ||||||||||||||||||||||||       |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30775877 acagaatttactattaatattacatttttttcagatgc---taaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatattttgttgt 30775781  T
Q  101 ggccattcaaggttgtttctggtgttaatgacaaacccatgatttcccttaagttcaagggccaggagaaactcctccgtgccgaggaaatttcatcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30775780 ggccattcaaggttgtttctggtgttaatgacaaacccatgatttcccttaagttcaagggccaggagaaactcctctgtgccgaggaaatttcatcaat 30775681  T
Q  201 agtcctcacaaatatgagagagat 224  Q
    ||||||||||||||||||||||||    
T  30775680 agtcctcacaaatatgagagagat 30775657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 9335479 - 9335574
Alignment:
Q  49 ttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 144  Q
    |||| ||||||||| ||||| || |  |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  9335479 ttaactggtaggaagtttagtgatctggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgatt 9335574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 35133033 - 35132931
Alignment:
Q  42 taaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatg 141  Q
    ||||||||||||||||||||| ||||| || ||| |||||||| | |||||| || | ||||||||||||||   | | ||||| |||||||||||||||    
T  35133033 taaaaggttaattggtaggaagtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgtaaatgacaaacccatg 35132934  T
Q  142 att 144  Q
    |||    
T  35132933 att 35132931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 16661577 - 16661748
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||||||| | ||||     
T  16661577 aggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaaacctacgatta 16661676  T
Q  146 cccttaagttcaagggccaggagaaactcctccgtgccgaggaaatttcatcaatagtcctcacaaatatga 217  Q
       |||||| |||||| |||||||| |||||  ||||||||||||| ||||| || ||||||||||| ||||    
T  16661677 gtgttaagtacaagggtcaggagaagctcctttgtgccgaggaaatctcatctattgtcctcacaaacatga 16661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 7542809 - 7542683
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| ||||| || |||||||||||| | |||||| |||| ||||||||||||||   | | ||||  ||||||| ||||||||||     
T  7542809 aggttaattggtaggaagtttagtgatcctgttgttcaagatgatatactgttatggccattcaaggtgactgcgggtgacaatgacagacccatgatta 7542710  T
Q  146 cccttaagttcaagggccaggagaaac 172  Q
    || |||||| |||||  ||||||||||    
T  7542709 ccgttaagtacaaggatcaggagaaac 7542683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 12235272 - 12235174
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 144  Q
    ||||||||||||||||| ||||| || |  ||||||||| | ||| |  ||||||||||||||||||| | | ||||||| ||||||||||||||||||    
T  12235272 aggttaattggtaggaagtttagtgatcaagttgttcaagatgatgtgatgttgtggccattcaaggtcgctgctggtgtcaatgacaaacccatgatt 12235174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 16657098 - 16657200
Alignment:
Q  42 taaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatg 141  Q
    |||||||||||| |||||||| ||||| || |||||||||||||| |||||  | |||||||||||||||||  || | || || ||||||||||| |||    
T  16657098 taaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatg 16657197  T
Q  142 att 144  Q
    |||    
T  16657198 att 16657200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 11999977 - 11999853
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    |||||||||||| |||| ||||| || | |||||||||| | |||  |||||| ||||||||||||||   | ||| ||| ||||||||||| || |||     
T  11999977 aggttaattggttggaagtttagtgatcttgttgttcaagatgatggattgttatggccattcaaggtcactgctgatgtcaatgacaaaccaataatta 11999878  T
Q  146 cccttaagttcaagggccaggagaa 170  Q
    |  |||||| ||| |||||||||||    
T  11999877 ctgttaagtacaaaggccaggagaa 11999853  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 43625993 - 43625930
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattca 109  Q
    |||||||| |||||||| ||||| ||  ||||||||||||| |||||  |||||||||||||||    
T  43625993 aggttaatcggtaggaagtttagtgattctgttgttcaaaatgatatcatgttgtggccattca 43625930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 12258166 - 12258264
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 144  Q
    ||||||||||||||||| ||||| || |  || |||||| | |||||| ||||||||||||| || ||   | ||||||| |||| |||||||||||||    
T  12258166 aggttaattggtaggaagtttagtgatcaagtagttcaagatgatataatgttgtggccatttaaagtcactgctggtgtcaatggcaaacccatgatt 12258264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 8668002 - 8667878
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||     
T  8668002 aggttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgatta 8667903  T
Q  146 cccttaagttcaagggccaggagaa 170  Q
    |  |||||| |||||| || |||||    
T  8667902 ctgttaagtacaagggtcaagagaa 8667878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 8671217 - 8671313
Alignment:
Q  48 gttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 144  Q
    ||||||||||||||| ||||| || || |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8671217 gttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgatt 8671313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 8585291 - 8585406
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| ||||| || || ||||||||||| |||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||     
T  8585291 aggttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggttatctctggtgttaatgacaaacctatgatta 8585390  T
Q  146 cccttaagttcaaggg 161  Q
    |  |||||| ||||||    
T  8585391 ctgttaagtacaaggg 8585406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 13333041 - 13333217
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| ||||| || || ||||||||||| |||||| ||||||||||||||||||||  ||||||||| || ||||| || ||||||     
T  13333041 aggttaattggtaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgtcaacgacaagcctatgatta 13333140  T
Q  146 cccttaagttcaagggccaggagaaactcctccgtgccgaggaaatttcatcaatagtcctcacaaatatgagagag 222  Q
    ||  ||||| |||||| || ||||| | | |  ||||||||||||| ||||| || ||||| ||||| ||| |||||    
T  13333141 ccgctaagtgcaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttacaaagatgcgagag 13333217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 8629115 - 8628991
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| ||||| || |||||||||||||| |||||  |||| ||||||||||||||| |||||||| |||||||||| || ||||||     
T  8629115 aggttaattggtaggaagtttagtgatcctgttgttcaaaaggatatcatgttctggccattcaaggttatttctggtcttaatgacaagcctatgattg 8629016  T
Q  146 cccttaagttcaagggccaggagaa 170  Q
    |  |||||| |||||| || |||||    
T  8629015 ctgttaagtacaagggtcaagagaa 8628991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 206
Target Start/End: Original strand, 10493959 - 10494119
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||| ||||| ||||| || || ||||||||||| |||||| ||||||||||||||||||||  ||| ||||| ||||||||||| ||||||     
T  10493959 aggttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgacaaacctatgatta 10494058  T
Q  146 cccttaagttcaagggccaggagaaactcctccgtgccgaggaaatttcatcaatagtcct 206  Q
    ||  ||||| |||||| || ||||| | | |  ||||||||||||| ||||| || |||||    
T  10494059 ccgctaagtacaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtcct 10494119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 8655033 - 8654935
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 144  Q
    ||||||||||||||||| | ||| || ||| |||||||||| |||||  ||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  8655033 aggttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgacaaacccatgatt 8654935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 3147855 - 3147731
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| ||| | ||  ||||||||||||| |||||  |||||||||||||||||||  |||  || || |||||||||||||||||||    
T  3147855 aggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtcatttgcggagtgaatgacaaacccatgattt 3147756  T
Q  146 cccttaagttcaagggccaggagaa 170  Q
    |  |||||| |||||| ||||||||    
T  3147755 cggttaagtgcaagggacaggagaa 3147731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 17268518 - 17268356
Alignment:
Q  50 taattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatttccct 149  Q
    ||||||||||||| ||||| || ||||| || |||||||||||| ||| |||||||||||||||  || | | | | ||||||||||| |||||||||||    
T  17268518 taattggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatatgaatgacaaaccaatgatttccct 17268419  T
Q  150 taagttcaagggccaggagaaactcctccgtgccgaggaaatttcatcaatagtcctcacaaa 212  Q
     |||| |||||| | |||||||| | |  |||| ||||||||||| || || || ||||||||    
T  17268418 caagtacaagggacgggagaaacacttttgtgcagaggaaatttcgtctatggtactcacaaa 17268356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 17260817 - 17260698
Alignment:
Q  53 ttggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatttcccttaa 152  Q
    |||||||||| ||||| || ||||| || |||||||||||| ||| |||||||||||||||  || | | | | ||||||||||| ||||||||||| ||    
T  17260817 ttggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatatgaatgacaaaccaatgatttccctcaa 17260718  T
Q  153 gttcaagggccaggagaaac 172  Q
    || |||||| | ||||||||    
T  17260717 gtacaagggacgggagaaac 17260698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 6790095 - 6789997
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 144  Q
    ||||||||||||||||| ||||| ||  ||||||||||||| |||||  |||| ||||||||||||||  || |||| || |||||||| |||||||||    
T  6790095 aggttaattggtaggaagtttagtgattctgttgttcaaaatgatatgatgttttggccattcaaggtcattgctggcgtcaatgacaagcccatgatt 6789997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 27830460 - 27830638
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| || |||||   |||||||||||||||||||   ||||||| |||||| ||  || ||| ||| ||  ||||||||||| ||     
T  27830460 aggttaattggtaggaagttcagcgatgatgttgttcaaaaagatataaacttgtggctattcaaagtcattactgatgtaaacaacaaacccatgtttg 27830559  T
Q  146 cccttaagttcaagggccaggagaaactcctccgtgccgaggaaatttcatcaatagtcctcacaaatatgagagagat 224  Q
       |||||| |||| | |||||||||| | |  |||| ||||||||||||||||| ||||| ||||| ||| |||||||    
T  27830560 ttgttaagtacaagagtcaggagaaacacttatgtgcggaggaaatttcatcaatggtccttacaaagatgcgagagat 27830638  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 8659943 - 8659848
Alignment:
Q  49 ttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 144  Q
    |||||||||||||| ||||| ||  | |||||||||||||| ||  |||||||||||||||||||| |  ||||||| || ||||||| |||||||    
T  8659943 ttaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggttatcgctggtgtgaacgacaaactcatgatt 8659848  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 1302044 - 1301923
Alignment:
Q  49 ttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatttccc 148  Q
    |||||||||||||| ||||| ||  | |||||||||||||| ||  |||||||||||||||||||  |  | ||||| |||||||||||| |||||        
T  1302044 ttaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaatgacaaacccgtgattgttg 1301945  T
Q  149 ttaagttcaagggccaggagaa 170  Q
    |||||| |||||| ||||||||    
T  1301944 ttaagtacaagggtcaggagaa 1301923  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 7877318 - 7877395
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggt 123  Q
    ||||| ||||| ||||||| ||||||  ||||| |||| || |||||  ||||||||||||| ||||||||| |||||    
T  7877318 aggttgattggaaggaaatatagcgattctgttattcagaatgatattctgttgtggccatttaaggttgttgctggt 7877395  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 34466378 - 34466529
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||| || |||||||| || |||| |||||||| ||||||  |||| ||||||||||| ||| || |||||||||||||||| || |||||||    
T  34466378 aggttaattggcagaaaatttagtgatcctgatgttcaaacagatatgatgttatggccattcaaagttattgctggtgttaatgacaagccaatgattt 34466477  T
Q  146 cccttaagttcaagggccaggagaaactcctccgtgccgaggaaatttcatc 197  Q
    |||||||||  ||||| |||||||| | |||  |||| |||||||| |||||    
T  34466478 cccttaagtataagggtcaggagaagcacctatgtgctgaggaaatctcatc 34466529  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 52549105 - 52549172
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggt 113  Q
    ||||||||||||| ||| ||||| || |||||||||||| | ||||||||||| ||| ||||||||||    
T  52549105 aggttaattggtaagaagtttagtgatcctgttgttcaagatgatatattgttatggtcattcaaggt 52549172  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 15595588 - 15595524
Alignment:
Q  77 ttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 144  Q
    |||||||||| ||||||  ||||||||||||||||||  |   |||||| ||||||||||||||||||    
T  15595588 ttgttcaaaatgatataaagttgtggccattcaaggtcat---tggtgtgaatgacaaacccatgatt 15595524  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 28220534 - 28220383
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| ||||| ||| ||||||||||| | ||||||  ||||||||||||||||||  |||| ||    || ||||||||||||||||    
T  28220534 aggttaattggtaggaagtttagtgactctgttgttcaagatgatataaagttgtggccattcaaggtcatttccggaacgaacgacaaacccatgattt 28220435  T
Q  146 cccttaagttcaagggccaggagaaactcctccgtgccgaggaaatttcatc 197  Q
    |  |||||| |||||| |||||||| | |||  ||||||| ||||| |||||    
T  28220434 ctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatc 28220383  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 43745430 - 43745279
Alignment:
Q  46 aggttaattggtaggaaatttagcgaccctgttgttcaaaaagatatattgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgattt 145  Q
    ||||||||||||||||| ||||  ||  ||| ||||||||| |||||   ||||||||| ||||||||  |||| ||  | |||||||||||| ||||||    
T  43745430 aggttaattggtaggaagtttaatgattctgatgttcaaaatgatatgaagttgtggccgttcaaggtcatttccggattgaatgacaaacccgtgattt 43745331  T
Q  146 cccttaagttcaagggccaggagaaactcctccgtgccgaggaaatttcatc 197  Q
    |  |||||| |||||| |||||||| | |||  ||||||| ||||| |||||    
T  43745330 ctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatc 43745279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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