View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11105_low_3 (Length: 655)

Name: NF11105_low_3
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11105_low_3
NF11105_low_3
[»] scaffold0649 (3 HSPs)
scaffold0649 (19-379)||(6219-6574)
scaffold0649 (500-644)||(5883-6027)
scaffold0649 (375-501)||(6074-6199)
[»] chr2 (3 HSPs)
chr2 (447-501)||(20968346-20968400)
chr2 (111-263)||(20968671-20968821)
chr2 (111-269)||(20981494-20981651)


Alignment Details
Target: scaffold0649 (Bit Score: 282; Significance: 1e-157; HSPs: 3)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 6574 - 6219
Alignment:
Q  19 aaaaagagtagtcaaagaactatgagtgacagaggcaatttcagttatatagaattggagacttttgcttgctttacacaaagaatataatgatcaagca 118  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6574 aaaaagagtagtcaaagaactatgagagacaaaggcaatttcagttatatagaattggagacttttgcttgctttacacaaagaatataatgatcaagca 6475  T
Q  119 gtgtgttgattcaaatgttatctgaagaagacaagaaaaaataaaccctaaaagatacacatcaagaatataaatgtttgtgctataaatgaagaaattg 218  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6474 gtgtgttgattcaaatgttatctgaagaagacaagaaaaaaaa---cctaaaagatacacatcaagaatataaatgtttgtgctataaatgaagaaattg 6378  T
Q  219 aagctccaataacgctttcatcctttcttcccattattccatcatgtaccagccacaactcttgtgcttgaagttgagttttagacctacaacgcacaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||| ||| |||||||||||||||||||    
T  6377 aagctccaataacgctttcatcctttcttcccattattccatcatgtaccatacacaatgcttgtgcttgaagttgggttgtagacctacaacgcacaaa 6278  T
Q  319 aatagaacagaaacacgagnnnnnnnntaaatgcataattcaatatcggaagaaagaaata 379  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  6277 aatagaacagaaacacgag--aaaaaataaatgcataattcaatatcggaagaaagaaata 6219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 500 - 644
Target Start/End: Complemental strand, 6027 - 5883
Alignment:
Q  500 ataatgtacttttcatgcttcgannnnnnnaatacgtttgtagaccaacccggtaacgaatttccaaaagggagtgaataatgtaccttgaacaatttca 599  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6027 ataatgtacttttcatgcttcggtttttttaatacgtttgtagaccaacccggtaacgaatttccaaaagggagggaataatgtaccttgaacaatttca 5928  T
Q  600 tcttcatagttataataaatataagaaaaacaaaagtttattcat 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5927 tcttcatagttataataaatataagaaaaacaaaagtttattcat 5883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 375 - 501
Target Start/End: Complemental strand, 6199 - 6074
Alignment:
Q  375 aaatacagtcctatacatgtaccaagagttgtgtttacatagattctatgacaatatcagaagaacaacaatatccaagaattggtgtagaaataaagta 474  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6199 aaatacagtc-tatacatgtaccaagagttgtgtttacatagattctatggcaatatcagaagaacaacaatatccaagaattggtgtagaaataaagta 6101  T
Q  475 attctcacttcatgaatcattatggat 501  Q
    |||||||||||||||||||||||||||    
T  6100 attctcacttcatgaatcattatggat 6074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 447 - 501
Target Start/End: Complemental strand, 20968400 - 20968346
Alignment:
Q  447 atccaagaattggtgtagaaataaagtaattctcacttcatgaatcattatggat 501  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  20968400 atccaagaactggtgtagaaataaagtaattctcacttcatgaatcatcatggat 20968346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 20968821 - 20968671
Alignment:
Q  111 atcaagcagtgtgttgattcaaatgttatctgaagaagacaagaaaaaataaaccctaaaagatacacatc---aagaatataaatgtttgtgctataaa 207  Q
    ||||||||||| |||| |||||||||||||| || ||||| ||||||||     ||||||||| |||||||   ||||| |||| |||||||||||||||    
T  20968821 atcaagcagtgagttgcttcaaatgttatctaaaaaagacgagaaaaaa-----cctaaaagaaacacatcaagaagaacataattgtttgtgctataaa 20968727  T
Q  208 tgaagaaattgaagctccaataacgctttcatcctttcttcccattattccatcat 263  Q
    |||||| |||| ||||| | | || |  || ||||||||||| || ||||||||||    
T  20968726 tgaagatattgcagctctagtgactcgatcttcctttcttccaatcattccatcat 20968671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 269
Target Start/End: Complemental strand, 20981651 - 20981494
Alignment:
Q  111 atcaagcagtgtgttgattcaaatgttatctgaagaagacaagaaaaaataaaccctaaaagatacacatc---aagaatataaatgtttgtgctataaa 207  Q
    |||||||| || |||| ||||||| || ||| || ||||||||||||||     ||||||||| |||||||   ||||| |||| ||||||||||||||     
T  20981651 atcaagcaatgagttgcttcaaatattgtcttaaaaagacaagaaaaaa-----cctaaaagaaacacatcaagaagaacataattgtttgtgctataat 20981557  T
Q  208 tg-aagaaattgaagctccaataacgctttcatcctttcttcccattattccatcatgtacca 269  Q
    || |||| |||| ||||||| | || |  || ||||||||||| || |||||| |||| ||||    
T  20981556 tgaaagatattgcagctccagtgacccaatcttcctttcttccaatcattccaccatgcacca 20981494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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