View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11105_low_4 (Length: 577)
Name: NF11105_low_4
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_low_4 |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 248 - 577
Target Start/End: Complemental strand, 17446413 - 17446083
Alignment:
| Q |
248 |
acctctatctattcattttagcaaattgcatcatggctgttgttattaatttcatgatttctcttgtaatattttcttctcttatgttaaacccttgtta |
347 |
Q |
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| T |
17446413 |
acctctatctattcattttagcaaattgcatcatggctgttgttcttaattgcatgatttctcttgtaatattttcttctcttatgttaaacccttgtta |
17446314 |
T |
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| Q |
348 |
ttgcctcaaccgtaaattgtttaaaaatgtttctgaaattcaaaatgataatgatcaatggcaaacggcaatagctacatggtatggagccccaaatggt |
447 |
Q |
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| T |
17446313 |
ttgcctcaaccgtaaattgtttaaaaatgtttctgaaattcaaaatgataatgatcaatggcaaacggcaatagctacatggtatggagccccaaatggt |
17446214 |
T |
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| Q |
448 |
tctggatcggatggtgagtgatacataatatactcatgnnnnnnnagttacaaactatgaaacaataacactactcagattaggtttgtccgaca-catt |
546 |
Q |
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| T |
17446213 |
gctggatcggatggtgagtgatacataatatactcatgtttttttagttacaaactatgaaacactaacactactcagattagacgtgtccgacaccatg |
17446114 |
T |
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| Q |
547 |
attacactgaattatgtagttttcttaaatt |
577 |
Q |
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| T |
17446113 |
attacactaaattatgtgattttcttaaatt |
17446083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 17446615 - 17446413
Alignment:
| Q |
18 |
atcattatattcaaatattgaaatccctacttaattaaatttcctaaatgaa-----------taaatacttgcgataatttcgcacattatagaagtag |
106 |
Q |
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| T |
17446615 |
atcattattttcaaatattgaaatacctacttaattaaatttcctaaatgaaatgataatgaataaatacctgcgataatttcgtacattacaggagtag |
17446516 |
T |
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| Q |
107 |
taattttgattacacgattaattgattgatatagcttttatgagaaaattaaaatatgataccatttttgaaaata--ttttactttaaatacgactact |
204 |
Q |
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| T |
17446515 |
taatt--gattacacgattaattggttgatatagcttttatgagaaaattaaaatataataccatttttgaaaatattttttactttaaatacgactact |
17446418 |
T |
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| Q |
205 |
atata |
209 |
Q |
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||||| |
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| T |
17446417 |
atata |
17446413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 466
Target Start/End: Complemental strand, 9630947 - 9630808
Alignment:
| Q |
324 |
ttctcttatgttaaacccttgttattgcctcaaccgtaaattgtttaaaaatgtttctgaaattcaaaatgataatgatcaatggcaaacggcaatagct |
423 |
Q |
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| T |
9630947 |
ttctcttctgattaacccttgttattgcctcaaccctaaattgttcaa---tgtttctgaaattcaaaatgttaatgatccatggcaaatggcaatagct |
9630851 |
T |
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| Q |
424 |
acatggtatggagccccaaatggttctggatcggatggtgagt |
466 |
Q |
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| T |
9630850 |
acatggtatggagcaccagaaggtgctggatcagatggtgagt |
9630808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 577
Target Start/End: Complemental strand, 14618826 - 14618793
Alignment:
| Q |
544 |
attattacactgaattatgtagttttcttaaatt |
577 |
Q |
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| T |
14618826 |
attattacactgaattatgtggttttcttaaatt |
14618793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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