View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11105_low_6 (Length: 532)
Name: NF11105_low_6
Description: NF11105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11105_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 220 - 516
Target Start/End: Original strand, 37201791 - 37202087
Alignment:
| Q |
220 |
ttgactaataagacgagactaaaagtttggtggaaacaggaacaatgagaaagatgacactaatgataatgaaggaacttttataagaccaatgaggtga |
319 |
Q |
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| T |
37201791 |
ttgactaataagacgagactaaaagtttggtggagacaggaacaatgagaaagatgacactaatgataatgaaggaacttttataagaccgatgaggtga |
37201890 |
T |
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| Q |
320 |
ggctggaaaaaccaatgagaacatcagtgtgagactcaagtaaaagccaggttggctagaagaatatgttaagagacattgaaacaacaaatgaagaata |
419 |
Q |
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| T |
37201891 |
ggctggaaaaaccaatgagaacatcagtgtgagactcaagtaaaagccaggttggctagaagaatatgttaagagacattgaaacaacaaatgaagaata |
37201990 |
T |
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| Q |
420 |
acacacctaccttagtcacttttactcaatttgaagatcatgtgcactttgaatatgcggtgaagaatctcaattggaggagagccatggatgttga |
516 |
Q |
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| T |
37201991 |
acacacctaccttagtcacttttactcaatttgaagatcatgtgcactttgaatatgcagtgaagaatctcaattggaggagagccatggatgttga |
37202087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 37201568 - 37201757
Alignment:
| Q |
26 |
ggcattacattaatccaaaaggagtcgtattaagccttaagtgtcgcactttagagtctttggatgtattgatcatgtacatgtgtctgataccaaaacg |
125 |
Q |
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| T |
37201568 |
ggcattacattaatccaaaaggagtcgtattaagccttaagtgtcgcactttagagtctttggatgtattgatcatgtacatgtgtctgataccaaaacg |
37201667 |
T |
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| Q |
126 |
aagaagctggaaaattggagcataagttaacgtgttttgttggaagtcagtgaggattcaaaggcctacagcttatatgatcataacacaaagtttg |
222 |
Q |
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| T |
37201668 |
aagaagctggaaaataggagcataagttaacgtgttttgttggaagtcagtgaggatt-------ctatagcttatatgatcataacacaaagtttg |
37201757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 26554143 - 26554193
Alignment:
| Q |
157 |
gtgttttgttggaagtcagtgaggattcaaaggcctacagcttatatgatc |
207 |
Q |
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| T |
26554143 |
gtgttttgttgggagtaagtgatgaatcaaaggcctacaggttatatgatc |
26554193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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