View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11106_high_1 (Length: 495)
Name: NF11106_high_1
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 17109801 - 17109335
Alignment:
| Q |
11 |
cagagagatgtatttgctggaaacgcccatttcagggagttgatgagaaggttggaacatttaatgagaaggaggctttttatacttgaaggcaaacctc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109801 |
cagagagatgtatttgctggaaacgcccatttcagggagttgatgagaaggttggaacatttaatgagaaggaggctttttatacttgaaggcaaacctc |
17109702 |
T |
|
| Q |
111 |
tagcggagaaggacaccaattgtggacaatcatttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109701 |
tagcggagaaggacaccaattgtggacaatcatttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctc |
17109602 |
T |
|
| Q |
211 |
taattttgaaagataaaactgctgaagccttggtgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattgagagagatgtgagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17109601 |
taattttgaaagataaaactgctgaagcctgggtgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattaagagagatgtgagt |
17109502 |
T |
|
| Q |
311 |
ttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaacatctagagtgtcaagattcgggaacagtttgagagggaaggtcgtta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109501 |
ttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaacatcaagagtgtcaagattcgggaacagtttgagagggaaggtcgtta |
17109402 |
T |
|
| Q |
411 |
gagagtcacagctaccactgatgaccaattttacaaggaaattgtagtgaccagctagtggaatttg |
477 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109401 |
gagagtcacagccaccactgatgaccaattttacaaggaaattgtagtgaccagctagtggaatttg |
17109335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 16978468 - 16978023
Alignment:
| Q |
12 |
agagagatgtatttgctggaaacgcccatttcagggagttgatgagaaggttggaacatttaatgagaaggaggctttttatacttgaaggcaaacctct |
111 |
Q |
| |
|
||||||||||||| | || || ||||||||||| |||||||| ||||| || || ||||| | |||| |||| || ||| ||||| |||||||||| |
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|
| T |
16978468 |
agagagatgtattggtcggcaaagcccatttcagcgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctcc |
16978369 |
T |
|
| Q |
112 |
agcggagaaggacaccaattgtggacaatcatttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctct |
211 |
Q |
| |
|
| ||||||| ||| |||| ||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||| |
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| T |
16978368 |
atcggagaacgactccaactgtggacaatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctcc |
16978269 |
T |
|
| Q |
212 |
aattttgaaagataaaactgctgaagccttggtgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattgagagagatgtgagtt |
311 |
Q |
| |
|
||||| |||| || ||| || || |||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
16978268 |
aatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtt |
16978169 |
T |
|
| Q |
312 |
taagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaacatctagagtgtcaagattcgggaacagtttgagagggaaggtcgttag |
411 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| || |||||||||||| || ||| |||||||| |||||||| || || ||||| || ||||| |
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| T |
16978168 |
taagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttag |
16978069 |
T |
|
| Q |
412 |
agagtcacagctaccactgatgaccaattttacaaggaaattgtag |
457 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||| ||||| |
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|
| T |
16978068 |
agagtcgcagctactggtgatgtccaattttacaaggaaactgtag |
16978023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 38 - 457
Target Start/End: Complemental strand, 17030314 - 17029895
Alignment:
| Q |
38 |
catttcagggagttgatgagaaggttggaacatttaatgagaaggaggctttttatacttgaaggcaaacctctagcggagaaggacaccaattgtggac |
137 |
Q |
| |
|
||||||| |||||||| ||||| || || ||||| | |||| |||| || ||| ||||| |||||||||| | ||||||| ||| |||| ||||||| |
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|
| T |
17030314 |
catttcaatgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtggac |
17030215 |
T |
|
| Q |
138 |
aatcatttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaag |
237 |
Q |
| |
|
||| || |||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| || || || |
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|
| T |
17030214 |
aattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcag |
17030115 |
T |
|
| Q |
238 |
ccttggtgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattgagagagatgtgagtttaagatgttcattttcctgtgaaatc |
337 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
17030114 |
ccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatc |
17030015 |
T |
|
| Q |
338 |
atttcgaaattaatacacttataaacatctagagtgtcaagattcgggaacagtttgagagggaaggtcgttagagagtcacagctaccactgatgacca |
437 |
Q |
| |
|
||||| ||| || |||||||||||| || ||| |||||||| |||||||| || || ||||| || ||||||||||| ||||||| ||||| ||| |
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| T |
17030014 |
atttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtcca |
17029915 |
T |
|
| Q |
438 |
attttacaaggaaattgtag |
457 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17029914 |
attttacaaggaaattgtag |
17029895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 38 - 457
Target Start/End: Complemental strand, 17048652 - 17048233
Alignment:
| Q |
38 |
catttcagggagttgatgagaaggttggaacatttaatgagaaggaggctttttatacttgaaggcaaacctctagcggagaaggacaccaattgtggac |
137 |
Q |
| |
|
||||||| |||||||| ||||| || || ||||| | |||| |||| || ||| ||||| |||||||||| | ||||||| ||| |||| ||||||| |
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|
| T |
17048652 |
catttcaatgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtggac |
17048553 |
T |
|
| Q |
138 |
aatcatttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaag |
237 |
Q |
| |
|
||| || |||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| || || || |
|
|
| T |
17048552 |
aattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcag |
17048453 |
T |
|
| Q |
238 |
ccttggtgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattgagagagatgtgagtttaagatgttcattttcctgtgaaatc |
337 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
17048452 |
ccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatc |
17048353 |
T |
|
| Q |
338 |
atttcgaaattaatacacttataaacatctagagtgtcaagattcgggaacagtttgagagggaaggtcgttagagagtcacagctaccactgatgacca |
437 |
Q |
| |
|
||||| ||| || |||||||||||| || ||| |||||||| |||||||| || || ||||| || ||||||||||| ||||||| ||||| ||| |
|
|
| T |
17048352 |
atttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtcca |
17048253 |
T |
|
| Q |
438 |
attttacaaggaaattgtag |
457 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17048252 |
attttacaaggaaattgtag |
17048233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 17024395 - 17024324
Alignment:
| Q |
292 |
aattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaac |
363 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||||| ||| ||||||| |||||| || |||||||||| |
|
|
| T |
17024395 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaac |
17024324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 17024531 - 17024488
Alignment:
| Q |
161 |
agagatggaaggaggatatgcatgcattcaggaagtgattttaa |
204 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
17024531 |
agagatggaaagaagatatgcatgcatttaggaagtgattttaa |
17024488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 17035157 - 17035086
Alignment:
| Q |
292 |
aattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaac |
363 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||||| ||| ||||||| |||||| || |||||||||| |
|
|
| T |
17035157 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaac |
17035086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 17035293 - 17035250
Alignment:
| Q |
161 |
agagatggaaggaggatatgcatgcattcaggaagtgattttaa |
204 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
17035293 |
agagatggaaagaagatatgcatgcatttaggaagtgattttaa |
17035250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 17089667 - 17089596
Alignment:
| Q |
292 |
aattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaac |
363 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||||| ||| ||||||| |||||| || |||||||||| |
|
|
| T |
17089667 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaac |
17089596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 17089803 - 17089760
Alignment:
| Q |
161 |
agagatggaaggaggatatgcatgcattcaggaagtgattttaa |
204 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
17089803 |
agagatggaaagaagatatgcatgcatttaggaagtgattttaa |
17089760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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