View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_high_14 (Length: 239)
Name: NF11106_high_14
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27475201 - 27474978
Alignment:
| Q |
1 |
cgatgatttcatgtcaaaccatcataaaagggaccaaataaactaagttcctcgaaatattgcatcttattacaattttagtatgccccttcatacatat |
100 |
Q |
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| T |
27475201 |
cgatgatttcaggttaaaccatcataaaagggaccaaataaactaagttcctcgaaatattgcatcttattacaattttagtatgccccttcatacatat |
27475102 |
T |
|
| Q |
101 |
agttgaactctagtttgtctcttaagaaagtgtgacaaaataaacttgaaacatatttagtttttgtttcattacagtgaactctatccacttagaaatc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27475101 |
agttgaactcttgtttgtctcttaagaaagtgtgacaaaatagacttgaaacatatttagtttttgtttcattacagtgaactctatccacttagaaatc |
27475002 |
T |
|
| Q |
201 |
tataatcaactaactctagtttct |
224 |
Q |
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|||||||||||||||||| ||||| |
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| T |
27475001 |
tataatcaactaactctaatttct |
27474978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 26058314 - 26058168
Alignment:
| Q |
60 |
ttgcatcttattacaattttagtatgccccttcatacatatagttgaactctagtttgtctcttaagaaagtgtgacaaaataaacttgaaacatattta |
159 |
Q |
| |
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|||||||||||||||||| ||| |||| | | ||||||| ||||||||| || |||| ||||||||| || ||||| | |||||||||| | ||| |
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| T |
26058314 |
ttgcatcttattacaattccagtttgccaccttatacatagtcttgaactcttgtctgtcccttaagaaattgcagcaaaagagacttgaaacacaatta |
26058215 |
T |
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| Q |
160 |
gtttttgtttcattacagtgaactctatccacttagaaatctataat |
206 |
Q |
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||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
26058214 |
gtttttgtttcattatagtgaactttatccactttaaaatctataat |
26058168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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