View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_high_15 (Length: 238)
Name: NF11106_high_15
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45106036 - 45106257
Alignment:
| Q |
1 |
ataaacttttaataaaccatcctttaattgttaaagattctctttctaattgaagtagtgtaatcaattattttaaagtttataaaatgcatttctcaat |
100 |
Q |
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| T |
45106036 |
ataaacttttaataa-ccatcctttaattgttaaagattctctttctaattgaagtagtgtaatcaattattttaaagtttataaaatgcattactcaat |
45106134 |
T |
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| Q |
101 |
ataaaacttcttagcatcaccctaaatatatttattgttaaaacaatttattataaaattttgtcattttaaacacaagtactggtgtcaaatcgtgaaa |
200 |
Q |
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| T |
45106135 |
ataaaacttcttagcatgaccctaaatatatttatcgttaaaacgatctattataaaattttgtcattttaaagataagtagtggtgtcaaatcttgaaa |
45106234 |
T |
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| Q |
201 |
gattcctgaaaataagttgatca |
223 |
Q |
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| T |
45106235 |
gattcctgaaaataagttgatca |
45106257 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 10980457 - 10980409
Alignment:
| Q |
58 |
gtgtaatcaattattttaaagtttataaaatgcatttctcaatataaaa |
106 |
Q |
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| T |
10980457 |
gtgtaatcaatgatttaaaagtctaaaaaatgcatttttcaatataaaa |
10980409 |
T |
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