View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_high_17 (Length: 228)
Name: NF11106_high_17
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 54608910 - 54608690
Alignment:
| Q |
1 |
catattatatgacggggttggagtttaaaccctggaaactccacttctccagaaaatataagagatgactagataacattaataagtgaagattggggaa |
100 |
Q |
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| T |
54608910 |
catattatatgtcggggttggaatttgaaccctggagactccacttctccataaaatataagagatgactagataacattaataagtgaagattggggaa |
54608811 |
T |
|
| Q |
101 |
gagtcactcttcttgcacgagaaagagagttgtccttccatcccgacaatttcatttaaatcttattcaacatgaacttaaaatagctattggaaactct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54608810 |
gagtcactcttcttgcacgagaaagagagttgtccttccatccc-acaatttcatttaaatcttattcaacatgaacttaaaatagctattggaaactct |
54608712 |
T |
|
| Q |
201 |
caaatcaatcatatgagcttcc |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
54608711 |
caaatcaatcatatgagcttcc |
54608690 |
T |
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