View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_high_2 (Length: 462)
Name: NF11106_high_2
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Complemental strand, 40518509 - 40518067
Alignment:
| Q |
13 |
agaagcatggcctttgaagatgagatatgtccaccaaaccctccatacagagcatgtacacactttttacggaatacttcacatccttttcgactttccg |
112 |
Q |
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| T |
40518509 |
agaagcatggcctttgaagatgagatatgtccaccaaaccctccatacagagcatgtacacactttttacggaatacttcacatccttttcgactttccg |
40518410 |
T |
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| Q |
113 |
aatcagtttgtcatcaagtacctctgttcaaacagaggagtcgcataataatagaagcaatagctaggctgaaaatttgatgagccaaatcatgattcca |
212 |
Q |
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| T |
40518409 |
aatcagtttgtcatcaagtacctctgttcaaacagaggagtcgcataataatataagcaatagctaggctgaaaatttgatgagccaaatcatgattcca |
40518310 |
T |
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| Q |
213 |
aaccttgcatgag--gacaccatcaaactagcaagggagaaattacggacatgggatgatcctggcatattatcatcaatatatatgcgcacgttagatt |
310 |
Q |
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| T |
40518309 |
aaccttgcatgagaggacaccgtcaaactagcaagggaaaaattacggacatgggatgatcctggcatattatcatcaatatatatgcgcacattagatt |
40518210 |
T |
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| Q |
311 |
atttaattttcaattgtataagatagttcgggtctcatctattttaactagttatggaaccagatttaactactagtcgtgagaggaatttttcatggta |
410 |
Q |
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| T |
40518209 |
atttaattttcaattgtataagatagttcgggtctcatctattttaactagttatggaaccagatttaactactagtcgtgagaggaatttttcatcgta |
40518110 |
T |
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| Q |
411 |
tattataactctatccaactcgagatattagtatttattgatg |
453 |
Q |
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| T |
40518109 |
tattataactctatccaactcgagatattagtatttatagatg |
40518067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 41837290 - 41837233
Alignment:
| Q |
13 |
agaagcatggcctttgaagatgagatatgtccaccaaaccctccatacagagcatgta |
70 |
Q |
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|||||| | |||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
41837290 |
agaagcctagcctttgaagatgagaggtgtccgccaaaccctccatacaaagcatgta |
41837233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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