View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11106_high_7 (Length: 302)

Name: NF11106_high_7
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11106_high_7
NF11106_high_7
[»] chr4 (2 HSPs)
chr4 (14-277)||(15016842-15017105)
chr4 (17-120)||(48027214-48027317)
[»] chr8 (2 HSPs)
chr8 (17-134)||(10257956-10258073)
chr8 (18-134)||(8782451-8782567)
[»] chr6 (1 HSPs)
chr6 (18-134)||(15609056-15609172)
[»] chr7 (2 HSPs)
chr7 (18-134)||(29130713-29130829)
chr7 (18-76)||(26753792-26753850)
[»] chr3 (3 HSPs)
chr3 (25-101)||(8725855-8725931)
chr3 (25-101)||(9077742-9077818)
chr3 (18-119)||(53580182-53580283)
[»] chr2 (1 HSPs)
chr2 (23-84)||(15746712-15746773)
[»] chr1 (2 HSPs)
chr1 (18-88)||(12969999-12970069)
chr1 (18-76)||(32922011-32922069)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 15016842 - 15017105
Alignment:
Q  14 agacgatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcctttagctgattta 113  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15016842 agacgatgatgaggatatctcagtttggtataacatatgaattgcaaacgatgttactcttattccacatgttgaggaagcttttcctttagctgattta 15016941  T
Q  114 aaagtctaacattgtatgctaaagtttatcgttcctccaaacaatttatgatcagcagattgttaacaacatagttaacacaccactttatgcatcagtt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15016942 aaagtctaacattgtatgctaaagtttatcgttcctccaaacaatttatgatcagcagattgttaacaacatagttaacacaccactttatgcatcagtt 15017041  T
Q  214 atggaggattgcaatttctggactctcgagaaaagaaaacaatggggaatatttagttcgtagt 277  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  15017042 atggaggattgcaatgtctgcactgtcgagaaaagaaaacaatggggaatatttagttcgtagt 15017105  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 48027317 - 48027214
Alignment:
Q  17 cgatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcctttagctgatttaaaa 116  Q
    ||||| ||| ||||||| ||||||||||||||  ||||||||||| ||| || | ||||| ||||||| ||| | || ||||||| |||||||| ||| |    
T  48027317 cgatggtgatgatatctcagtttggtataacaactggattgcaaatgatatttcacttatcccacatgctgatggagattttcctctagctgatctaaga 48027218  T
Q  117 gtct 120  Q
    ||||    
T  48027217 gtct 48027214  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 10257956 - 10258073
Alignment:
Q  17 cgatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcctttagctgatttaaaa 116  Q
    |||| |||| ||||||||  |||| |||||||  ||||||||||| ||| |||| ||||| ||||||||||| | || |||||||||||||||| |||      
T  10257956 cgatcatgatgatatcttgatttgttataacaagtggattgcaaatgatattacacttatcccacatgttgatggagattttcctttagctgatctaagt 10258055  T
Q  117 gtctaacattgtatgcta 134  Q
    |||| | |||||||||||    
T  10258056 gtctcagattgtatgcta 10258073  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 8782451 - 8782567
Alignment:
Q  18 gatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcctttagctgatttaaaag 117  Q
    |||| |||||||||||  ||||||||||||| |||||||||||| |||||||| ||||  ||||| | ||| | |  ||||||| |||||||  ||| ||    
T  8782451 gatggtgaggatatctcggtttggtataacaaatggattgcaaatgatgttacacttaacccacaggctgatggaaattttcctctagctgacctaagag 8782550  T
Q  118 tctaacattgtatgcta 134  Q
    ||||| |||| ||||||    
T  8782551 tctaagattgcatgcta 8782567  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 15609056 - 15609172
Alignment:
Q  18 gatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcctttagctgatttaaaag 117  Q
    |||||||| |||||||  |||||||||||||  ||||||||||  |||||||| ||||| ||||||||||| | || |||| || |||||||| ||| ||    
T  15609056 gatgatgatgatatctcggtttggtataacaagtggattgcaactgatgttacacttatcccacatgttgatggagatttttctctagctgatctaagag 15609155  T
Q  118 tctaacattgtatgcta 134  Q
    ||||  |||| ||||||    
T  15609156 tctaggattgcatgcta 15609172  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 29130829 - 29130713
Alignment:
Q  18 gatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcctttagctgatttaaaag 117  Q
    |||| ||||||||||| ||||||||||||||  ||||||||||| |||||||| ||||| || |||| | | | |  ||||||| |||||||| ||| ||    
T  29130829 gatggtgaggatatctcagtttggtataacaagtggattgcaaatgatgttacacttatcccgcatgctaatggacattttcctctagctgatctaagag 29130730  T
Q  118 tctaacattgtatgcta 134  Q
    ||| | |||| ||||||    
T  29130729 tctcagattgcatgcta 29130713  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 26753792 - 26753850
Alignment:
Q  18 gatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttat 76  Q
    |||| ||||||||||| ||||||||||||||  ||||||||||| |||||||| |||||    
T  26753792 gatggtgaggatatctcagtttggtataacaagtggattgcaaatgatgttacacttat 26753850  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 8725855 - 8725931
Alignment:
Q  25 aggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcct 101  Q
    ||||||||| ||||||||||||||  ||||||||||| |||||||| ||||| ||||| ||||| | || |||||||    
T  8725855 aggatatctcagtttggtataacaagtggattgcaaatgatgttacacttatcccacaggttgatggagattttcct 8725931  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 9077742 - 9077818
Alignment:
Q  25 aggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcct 101  Q
    ||||||||| ||||||||||||||  ||||||||||| |||||||| ||||| ||||| ||||| | || |||||||    
T  9077742 aggatatctcagtttggtataacaagtggattgcaaatgatgttacacttatcccacaggttgatggagattttcct 9077818  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 53580182 - 53580283
Alignment:
Q  18 gatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttgaggaagcttttcctttagctgatttaaaag 117  Q
    |||| ||| ||||||| | ||||||||||||  ||||||||||| || ||||| |||||  |||||| | | |||| ||||||| |||||||| ||||||    
T  53580182 gatggtgatgatatctcaatttggtataacaagtggattgcaaatgaagttacacttatcgcacatgctaatgaagattttcctctagctgatctaaaag 53580281  T
Q  118 tc 119  Q
    ||    
T  53580282 tc 53580283  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 15746773 - 15746712
Alignment:
Q  23 tgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatg 84  Q
    ||||||||||| |||||| |||||||  ||||||||||| |||||||| ||||| |||||||    
T  15746773 tgaggatatctcagtttgatataacaagtggattgcaaatgatgttacacttatcccacatg 15746712  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 12969999 - 12970069
Alignment:
Q  18 gatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttattccacatgttga 88  Q
    |||| |||||||||||  |||| ||||| ||||  ||||||||| |||||||| |||||| ||||||||||    
T  12969999 gatggtgaggatatctcggttttgtatatcataatgattgcaaatgatgttacacttatttcacatgttga 12970069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 32922011 - 32922069
Alignment:
Q  18 gatgatgaggatatcttagtttggtataacatatggattgcaaacgatgttactcttat 76  Q
    |||| |||||||||||  ||||| ||||||| |||||||||||| |||||||| |||||    
T  32922011 gatggtgaggatatctaggtttgatataacaaatggattgcaaatgatgttacacttat 32922069  T

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