View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11106_high_8 (Length: 290)

Name: NF11106_high_8
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11106_high_8
NF11106_high_8
[»] chr4 (2 HSPs)
chr4 (9-285)||(40825241-40825517)
chr4 (54-265)||(40820593-40820804)
[»] chr7 (16 HSPs)
chr7 (9-285)||(20287621-20287900)
chr7 (54-285)||(20293037-20293268)
chr7 (70-285)||(20169477-20169692)
chr7 (13-197)||(20064024-20064208)
chr7 (46-285)||(20302231-20302470)
chr7 (51-285)||(20242025-20242259)
chr7 (54-285)||(20272230-20272461)
chr7 (62-280)||(20300174-20300392)
chr7 (51-213)||(20262658-20262820)
chr7 (54-285)||(20230078-20230309)
chr7 (54-190)||(20277974-20278110)
chr7 (32-210)||(20282530-20282710)
chr7 (206-285)||(20090485-20090564)
chr7 (62-139)||(20090582-20090659)
chr7 (233-285)||(20063951-20064003)
chr7 (122-198)||(47602088-47602164)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 40825517 - 40825241
Alignment:
Q  9 gagaagaaagatgtacaaattatatggagtagccaacaatcggaatgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40825517 gagaagaaagatgtacaaattatatggagtagccaacaatcggaatgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttac 40825418  T
Q  109 cgatatgcagttgtttgagaggatttgaacccaggaacaaacgggagtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtg 208  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40825417 cgatatgcagttgtttgagaggatttgaacccaggaacaaacaggagtggaatagacacaactggacaggtgggtgtgttagaaggacacttttgcagtg 40825318  T
Q  209 tgaaaaggtcaataataagacaacaagtacaaaggaagatgggtttctgaaattgcagatggttaaagttcccgatt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  40825317 tgaaaaggtcaataataagacaacaagtacaaaggaagatgggtttttgaaattgcagatggttaaagttcctgatt 40825241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 265
Target Start/End: Complemental strand, 40820804 - 40820593
Alignment:
Q  54 tgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacggg 153  Q
    ||||| ||||||||||||||||  |||||| |||||||||||| |||||  |  || ||||| || ||||| |||||||||| |||||| |||| |   |    
T  40820804 tgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttattgagctcgccaatatgtagctgttttagaggatttgtacccagaaacatagaag 40820705  T
Q  154 agtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggtt 253  Q
    | |||| || ||| || ||||| ||| ||| |||||| ||||||| |||| ||||||||| | |||  ||||| || || |||||||||||| |||||||    
T  40820704 aatggagtatacataattggacgggtcggtgtgttaggaggacacctttggagtgtgaaaggatcagcaataaaaccacgagtacaaaggaaaatgggtt 40820605  T
Q  254 tctgaaattgca 265  Q
    | ||||||||||    
T  40820604 tttgaaattgca 40820593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 20287621 - 20287900
Alignment:
Q  9 gagaagaaagatgtacaaattatatggagtagccaacaatcggaatgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttac 108  Q
    |||||||||||  |||||||||||  || |||||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  20287621 gagaagaaagaattacaaattatacagactagccaactatcggaatgtgacatttatggtatatgtggggcattcgcaagctgtagttcattgaagttac 20287720  T
Q  109 cgatatgcagttgtttgagaggatttgaacccaggaacaaacgggagtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtg 208  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  20287721 caatatgcagttgtttgagaggatttgaacccaggaacaaacaggagtggaatagacacaactggactggtgggtgtgttagaaggatacttttgcagtg 20287820  T
Q  209 tgaaaaggtcaataataagacaacaagtaca---aaggaagatgggtttctgaaattgcagatggttaaagttcccgatt 285  Q
    ||||| |||||||||||| || |||||||||   ||||||||||| ||| |||||||| |||||||||||||||| ||||    
T  20287821 tgaaagggtcaataataacaccacaagtacaaagaaggaagatggatttttgaaattgaagatggttaaagttcctgatt 20287900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 54 - 285
Target Start/End: Original strand, 20293037 - 20293268
Alignment:
Q  54 tgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacggg 153  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||||  | ||| ||||| || |||||||||||||||| |||||| |||| |   |    
T  20293037 tgtgatgtttatggtatatgtggggcctttgcaagctgtagttcattgagctcaccaatatgtagctgtttgagaggatttgtacccagaaacatagaag 20293136  T
Q  154 agtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggtt 253  Q
    | |||| || ||| || ||||| ||||||| |||||| ||||||| |||| ||||||||| |||||| ||||| || || ||||||||||||||||||||    
T  20293137 aatggagtaaacataattggaccggtgggtgtgttaggaggacacctttggagtgtgaaagggtcaacaataaaaccaccagtacaaaggaagatgggtt 20293236  T
Q  254 tctgaaattgcagatggttaaagttcccgatt 285  Q
    | |||||||| |||||||||||||||| ||||    
T  20293237 tttgaaattgaagatggttaaagttccagatt 20293268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 285
Target Start/End: Complemental strand, 20169692 - 20169477
Alignment:
Q  70 tatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacgggagtggaatagacacaa 169  Q
    |||||||||||||| |||| |||| ||||||||  | ||| | ||| || ||||||||||| ||||||||||| |||| |    | ||||||| ||| ||    
T  20169692 tatgtggggcatttgcaagttgtaattcattgagctcaccaacatgtagctgtttgagagggtttgaacccagaaacatagaacaatggaatatacataa 20169593  T
Q  170 ctggacaggtgggtatgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggtttctgaaattgcagatg 269  Q
    |||||| ||||||| |||| ||||||||| |||||||||||||| |||||| ||||| || |||||||||||||||||||||||| ||||| | || |||    
T  20169592 ctggaccggtgggtgtgttcgaaggacacctttgcagtgtgaaagggtcaacaataaaaccacaagtacaaaggaagatgggtttttgaaactacaaatg 20169493  T
Q  270 gttaaagttcccgatt 285  Q
     |||||||||| ||||    
T  20169492 attaaagttccagatt 20169477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 20064208 - 20064024
Alignment:
Q  13 agaaagatgtacaaattatatggagtagccaacaatcggaatgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgat 112  Q
    ||||||| || ||| ||| ||||| ||||| | |||| || ||||| || ||||||| ||||||||||||| |||||||||||||||||||   ||| ||    
T  20064208 agaaagaagtgcaagttacatggactagccgaaaatcagagtgtgatgtatatggtacatgtggggcatttgcaagctgtagttcattgaacacaccaat 20064109  T
Q  113 atgcagttgtttgagaggatttgaacccaggaacaaacgggagtggaatagacacaactggacaggtgggtatgttagaaggaca 197  Q
    |||||| ||||||| |||||||||||| |||| || || ||| ||||||||| |||||||||||||||||| |||||| ||||||    
T  20064108 atgcagctgtttgaaaggatttgaacctaggagcatacaggaatggaatagaaacaactggacaggtgggtgtgttaggaggaca 20064024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 46 - 285
Target Start/End: Original strand, 20302231 - 20302470
Alignment:
Q  46 aatcggaatgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaa 145  Q
    ||||||| ||||| ||||||||||| || ||||||||| |||  |||| ||||||||     || || ||||| ||||||| ||| ||||| || |  ||    
T  20302231 aatcggagtgtgatgtttatggtatttgcggggcatttgcaatttgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccaatcaa 20302330  T
Q  146 caaacgggagtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaa 245  Q
    || || ||| ||||||||| |||| |||||  |||||| |||||| || | |  |||||||||||||| |||||| ||||| || ||||||||||| |||    
T  20302331 catacaggaatggaatagaaacaattggactagtgggtgtgttaggagaagatctttgcagtgtgaaagggtcaacaataaaaccacaagtacaaaagaa 20302430  T
Q  246 gatgggtttctgaaattgcagatggttaaagttcccgatt 285  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  20302431 gatgggtttttgaaattgcagatggttaaagttcccgatt 20302470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 285
Target Start/End: Original strand, 20242025 - 20242259
Alignment:
Q  51 gaatgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaac 150  Q
    |||||||| ||||||||| ||||||| |  ||| ||||||||| ||||||||  | |||  | ||||||||||||| ||||||||||||||| || |  |    
T  20242025 gaatgtgatgtttatggtctatgtggagattttacaagctgtaattcattgagctcaccagtttgcagttgtttgaaaggatttgaacccagaaatactc 20242124  T
Q  151 gggagtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgg 250  Q
    | || |||| |||| |||||||||| || |||| ||||||   || || ||||| |||| ||| |||||  ||||| || ||||||| ||||||||||||    
T  20242125 gtgaatggagtagaaacaactggactggcgggtgtgttaggcagagacctttgctgtgtaaaagggtcaccaataaaaccacaagtagaaaggaagatgg 20242224  T
Q  251 gtttctgaaattgcagatggttaaagttcccgatt 285  Q
    |||||||||| | ||||||||||||||||| ||||    
T  20242225 gtttctgaaactacagatggttaaagttccagatt 20242259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 285
Target Start/End: Original strand, 20272230 - 20272461
Alignment:
Q  54 tgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacggg 153  Q
    ||||| ||||||||||||||||| |||||| ||| ||||||||||| ||  | ||| |||||||| ||| ||| |||||||||||| |  || | ||| |    
T  20272230 tgtgatgtttatggtatatgtggcgcatttgcaatctgtagttcatcgacctcaccaatatgcagctgtctgaaaggatttgaacctaaaaatatacgtg 20272329  T
Q  154 agtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggtt 253  Q
    | ||||| | | |||||||| | ||||||| |||||| | ||||| ||||||||| |||| |||| | ||||| || ||||||||||||||||||||| |    
T  20272330 aatggaaaataaacaactggtctggtgggtgtgttaggaagacacctttgcagtgcgaaagggtccacaataaaaccacaagtacaaaggaagatgggat 20272429  T
Q  254 tctgaaattgcagatggttaaagttcccgatt 285  Q
    | ||||| | |||| | |||||||||| ||||    
T  20272430 tttgaaactacagacgattaaagttccagatt 20272461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 280
Target Start/End: Original strand, 20300174 - 20300392
Alignment:
Q  62 ttatggtatatgtggggcattttcaagctgtagttcattgaagtt-accgatatgcagttgtttgagaggatttgaacccaggaacaaacgggagtggaa 160  Q
    |||||||||||| |||| |||| |||||||||||||| | ||||| ||| || ||||  ||||||| || ||||||||||| |   | ||  || |||||    
T  20300174 ttatggtatatgcggggtatttgcaagctgtagttcact-aagttcaccaatttgcacctgtttgaaagaatttgaacccaagtcgatacaagaatggaa 20300272  T
Q  161 tagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggtttctgaaa 260  Q
    |||| |||| ||||| ||||||| ||| || ||||||  ||| |||||| ||| |||||| ||||| || || ||||||||||||||||| ||| ||| |    
T  20300273 tagaaacaattggactggtgggtgtgtcaggaggacagcttttcagtgttaaagggtcaacaataaaaccaccagtacaaaggaagatggatttttgata 20300372  T
Q  261 ttgcagatggttaaagttcc 280  Q
    ||||||||||||||||||||    
T  20300373 ttgcagatggttaaagttcc 20300392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 20262658 - 20262820
Alignment:
Q  51 gaatgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaac 150  Q
    |||||||| ||||||||| | ||||| | |||| ||||||||| ||||||||  | |||| ||||||||||||||| ||||||||||||||| || |  |    
T  20262658 gaatgtgatgtttatggtctctgtggagaatttacaagctgtaattcattgagctcaccggtatgcagttgtttgaaaggatttgaacccagaaatactc 20262757  T
Q  151 gggagtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtgaaa 213  Q
    | || |||| |||| |||||||||| || |||| ||||||  ||| || ||||||||||||||    
T  20262758 gtgaatggagtagaaacaactggactggcgggtgtgttaggcggagacctttgcagtgtgaaa 20262820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 285
Target Start/End: Original strand, 20230078 - 20230309
Alignment:
Q  54 tgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacggg 153  Q
    ||||| ||||||||| |||||||||||||| ||||||||| ||||||||     || || ||||| ||||||| ||| ||||| ||   ||||| || ||    
T  20230078 tgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagg 20230177  T
Q  154 agtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggtt 253  Q
    | ||||||||| |||||||||| || |||| ||||||  ||| ||  ||||||||| ||| | ||   ||||| || ||| ||| ||||||||| |||||    
T  20230178 aatggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcggcaataaaaccacaggtagaaaggaagacgggtt 20230277  T
Q  254 tctgaaattgcagatggttaaagttcccgatt 285  Q
    | ||||| | ||||||||||||||||| ||||    
T  20230278 tttgaaactacagatggttaaagttccagatt 20230309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 20277974 - 20278110
Alignment:
Q  54 tgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacggg 153  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||||||   | ||| ||||| |  ||| |||||||||||||||| || |||| ||  |    
T  20277974 tgtgatgtttacggtatatgtggggcatttgcaagctgtagttcattgttctcaccaatatgtatctgtctgagaggatttgaacctagaaacatacaag 20278073  T
Q  154 agtggaatagacacaactggacaggtgggtatgttag 190  Q
    | |||||| |||| |||||||| ||||||| ||||||    
T  20278074 aatggaatggacataactggaccggtgggtgtgttag 20278110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 20282530 - 20282710
Alignment:
Q  32 atggagtagccaacaatcggaatgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgca--gttgtttgagag 129  Q
    |||||| |||||| | || || ||||| | |||||||||||||||||||||| ||||||||| |||||||   | ||| ||||| |    ||| ||||||    
T  20282530 atggagaagccaagactcagagtgtgatgcttatggtatatgtggggcatttgcaagctgtaattcattggtctcaccaatatgtatctctgtctgagag 20282629  T
Q  130 gatttgaacccaggaacaaacgggagtggaatagacacaactggacaggtgggtatgttagaaggacacttttgcagtgtg 210  Q
    |||||||||| || |||| ||  || ||||||| ||| |||||||| ||||||| |||||| || || | |||||||||||    
T  20282630 gatttgaacctagaaacatacaagaatggaatatacataactggaccggtgggtgtgttaggagaacccctttgcagtgtg 20282710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 20090564 - 20090485
Alignment:
Q  206 gtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggtttctgaaattgcagatggttaaagttcccgatt 285  Q
    |||| ||||||| || || || || |||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  20090564 gtgtcaaaaggttaacaacaaaaccacaaatacaaaggaagatgggtttttgaaattgaagatggttaaagttccagatt 20090485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 20090659 - 20090582
Alignment:
Q  62 ttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacc 139  Q
    |||||| || |||||||||||| |||  |||| || |||||| | ||||||||||| |||||||||||||||||||||    
T  20090659 ttatggcatttgtggggcatttgcaacgtgtaattaattgaactcaccgatatgcatttgtttgagaggatttgaacc 20090582  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 20064003 - 20063951
Alignment:
Q  233 aagtacaaaggaagatgggtttctgaaattgcagatggttaaagttcccgatt 285  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||| ||||    
T  20064003 aagtacaaaagaagatgggtttttgaaattgaagatggttaaagttcctgatt 20063951  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 47602164 - 47602088
Alignment:
Q  122 tttgagaggatttgaacccaggaacaaacgggagtggaatagacacaactggacaggtgggtatgttagaaggacac 198  Q
    ||||| ||| |||||||| |||||||||  | | ||||||||||| || ||||| ||||||| |||||| |||||||    
T  47602164 tttgaaagggtttgaaccaaggaacaaagagaaatggaatagacaaaaatggactggtgggtgtgttaggaggacac 47602088  T

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