View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_low_10 (Length: 269)
Name: NF11106_low_10
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 46 - 259
Target Start/End: Original strand, 47167700 - 47167913
Alignment:
| Q |
46 |
ctttttcaagaatttgagtatctgtgaatgatggaaataaatcaaattcttttcggtaaccagatgtgaatttttggtatgcctaccttttttcgcttac |
145 |
Q |
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| T |
47167700 |
ctttttcaagaatttgagtatctgtgaatgatggaaataaatcaaattcttttcagtaaccagatgtgaacttttggtatgcctaccttttttcgcttac |
47167799 |
T |
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| Q |
146 |
aaaagaattggctgttttattcccttggtttacattttgttgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttg |
245 |
Q |
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| T |
47167800 |
aaaagaattggctgttttattcccttggtttacattttgttgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttg |
47167899 |
T |
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| Q |
246 |
ttcctgacttcttc |
259 |
Q |
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| T |
47167900 |
ttcctgatttcttc |
47167913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 48714552 - 48714685
Alignment:
| Q |
128 |
ctaccttttttcgcttacaaaagaattggctgttttattccct-tggtttacattttgttgatctgttt-gtgaaggatgtttgcagacaaggttgcagc |
225 |
Q |
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| T |
48714552 |
ctaccttttttcacttgtaaaagaatcggttgtttcattccttctggtttacatttcgttgaattgttttgtgaaggatgtttgccgacaaggttgcagc |
48714651 |
T |
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| Q |
226 |
aactgggtattatgtggttgttcctgacttcttc |
259 |
Q |
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| T |
48714652 |
aaccgggtattatgtggtggttcccgacttcttc |
48714685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 48696713 - 48696808
Alignment:
| Q |
165 |
ttcccttggtttacattttgttgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttgttcctgacttcttct |
260 |
Q |
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| T |
48696713 |
ttcccctggtttacattttgttgatctgtttgtgaaggaatcttgccgacaaggttgcggcagcaggttattatgtggtagttcctgactacttct |
48696808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 46930475 - 46930540
Alignment:
| Q |
47 |
tttttcaagaatttgagtatctgtgaatgatggaaataaatcaaattcttttcggtaaccagatgt |
112 |
Q |
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| T |
46930475 |
ttttttaagaatttgagcatctgtggatgatggaaataaatcaaattcttttcagtaactagatgt |
46930540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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