View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_low_12 (Length: 253)
Name: NF11106_low_12
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_low_12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 45105715 - 45105953
Alignment:
| Q |
15 |
gaatcaccaataatccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactcc |
114 |
Q |
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| T |
45105715 |
gaatcaacaataatccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactgc |
45105814 |
T |
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| Q |
115 |
ctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaaa |
214 |
Q |
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| T |
45105815 |
ctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtgagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaaa |
45105914 |
T |
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| Q |
215 |
tcttcatcttattgtcactgccagcagtgtatttccttt |
253 |
Q |
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| T |
45105915 |
tcttcatcttattgtcactgccagcagtgtatttccttt |
45105953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 45132066 - 45132234
Alignment:
| Q |
79 |
caaattctgatcaggattgttgtaaatcatcactccctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaa |
178 |
Q |
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| T |
45132066 |
caaactctgatcaggattgctgcaaatcaccactctttgatgttaaagcaagaataatggaaaatgaggtactcattcagatgcactgtgagaaggaaaa |
45132165 |
T |
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| Q |
179 |
tggcattgagatcaaaatattgaatttgcttgaaaatcttcatcttattgtcactgccagcagtgtatt |
247 |
Q |
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| T |
45132166 |
tgacattgagatcaaaatatataacgtgctagaaaatcttgatctctttgtcactgctagcagtgtatt |
45132234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 45113266 - 45113373
Alignment:
| Q |
114 |
cctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaa |
213 |
Q |
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| T |
45113266 |
cctgatgtcaaagtgaaagtgttggagaataatatactcatttacatcaattgtgagaaggaaaatggcattcaacacaaaatattggacatgcttcaaa |
45113365 |
T |
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| Q |
214 |
atcttcat |
221 |
Q |
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| T |
45113366 |
atcttcat |
45113373 |
T |
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