View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_low_3 (Length: 436)
Name: NF11106_low_3
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 5159590 - 5160004
Alignment:
| Q |
1 |
acaaccacaaaccaaaccagaaaaaacatcactcattctcagactacacaaaggtcacaaacagaggggnnnnnnnctacaaattctgaagaatagagag |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5159590 |
acaaccacaaaccaaaccagaaaaaacatcactcattctcagactacacaaaggtcacaaacagaggggaaaaaaactacaaattctgaagaatagagag |
5159689 |
T |
|
| Q |
101 |
agcataaaaaagacgaggtatcttgttcttgtgataagataatatgctcttacgtggcaacatctatgctcctgttccatcctccctacgacttaacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159690 |
agcataaaaaagacgaggtatcttgttcttgtgataagataatatgctcttacgtggcaacatctatgctcctgttccatcctccctacgacttaacttc |
5159789 |
T |
|
| Q |
201 |
aaatcacaaactcacccacgaaacctcaccatttcttgtcaagcaagcctagactacccactctcaatatccgacgaaaccctagaaaagcgaggtttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5159790 |
aaatcacaaactcacccacgaaacctcaccatttcttgtcaagcaagcctagactacccactctcaatatccgacgaaaccctagaaaagcgaggtttca |
5159889 |
T |
|
| Q |
301 |
ttctccgccgaaccgcagaggggttaaacctagaagcacttaacaaaatattcgtagcagtagggtttccgcggcgcgacccggagaaaatacgcgttgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159890 |
ttctccgccgaaccgcagaggggttaaacctagaagcacttaacaaaatatttgtagcagtagggtttccgcggcgcgacccggagaaaatacgcgttgc |
5159989 |
T |
|
| Q |
401 |
actcgagcacactga |
415 |
Q |
| |
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||||||||||||||| |
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|
| T |
5159990 |
actcgagcacactga |
5160004 |
T |
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