View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_low_4 (Length: 420)
Name: NF11106_low_4
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 53562172 - 53562552
Alignment:
| Q |
19 |
atctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtgttggaattatttggcatgctgttatttggagtatatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53562172 |
atctttttattttgtgggaatgttggaatggagctgttttaaataataagacccgtaaaggtgttagaattatttggcatgctgttatttggagtatatg |
53562271 |
T |
|
| Q |
119 |
gaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
53562272 |
gaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttgca----gtcaaggttttgtcttggaggtggagtttgggaaga |
53562367 |
T |
|
| Q |
219 |
ttaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtgaggttgttttgtttgggagagctgctgctgcgtgg |
318 |
Q |
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| T |
53562368 |
ttaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtgaggttgttttgtttgggagagctgctgctgcgtgg |
53562467 |
T |
|
| Q |
319 |
tgtctggctgtgttcattgaggttgtgcagttctgttgtggtgctgctggtttttctgtttgcagcagctcttatgctttctgtg |
403 |
Q |
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| T |
53562468 |
tgtctggctgtgttcattgaggctgtgcagttctgttgtggtgctgctggtttttctgtttgcagcagctcttatgctttctgtg |
53562552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 284
Target Start/End: Complemental strand, 34821420 - 34821223
Alignment:
| Q |
88 |
ttatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaa |
187 |
Q |
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| T |
34821420 |
ttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttagattttgaggcactgttggaatcaataaa |
34821321 |
T |
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| Q |
188 |
ggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaagga-ctgtttgatgcggtga |
284 |
Q |
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|||||||| ||||||||| |||| || |||| | ||||| | | |||||| ||||| |||| |||||||| ||||| ||||||||||||||| |
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| T |
34821320 |
ggttttgtggtggaggtggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaatccaaaggatttgtttgatgcggtga |
34821223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 284
Target Start/End: Original strand, 4903799 - 4903993
Alignment:
| Q |
90 |
atttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaagg |
189 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| |||||||||||||| |||| |
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| T |
4903799 |
atttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagctgttggaatctgttaagg |
4903898 |
T |
|
| Q |
190 |
ttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtga |
284 |
Q |
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| T |
4903899 |
tgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtga |
4903993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 1557204 - 1557447
Alignment:
| Q |
19 |
atctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtgttggaattatttggcatgctgttatttggagtatatg |
118 |
Q |
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|||| |||||| ||||||||||||||| |||||||||| | ||||| ||||| || || ||||| | ||||||||||||| ||||||| || || |
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| T |
1557204 |
atctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcggaagggtgtgaggcttatttggcatgccaccatttggaacatttg |
1557303 |
T |
|
| Q |
119 |
gaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaaga |
218 |
Q |
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|||||| ||||| |||| | ||||||||||| | | || |||| | ||| |||||||| | ||||| ||||| ||||||||| ||||||| ||| |
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| T |
1557304 |
gaaagcaaggaatgacattgtgttcaataatgcgactttagaccttgaagctctcttggaatcaattaaggtattgtcgtggaggtggtgtttgggtaga |
1557403 |
T |
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| Q |
219 |
ttaaagttgccggcgtttttgttctacgagtggacgtggaatcc |
262 |
Q |
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|| | ||||| || | |||||| ||||| |||| |||||||| |
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| T |
1557404 |
ttgagcttgccagcttgtttgttttacgaatggaattggaatcc |
1557447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 284
Target Start/End: Complemental strand, 22153758 - 22153564
Alignment:
| Q |
90 |
atttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaagg |
189 |
Q |
| |
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||||||||||| | ||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |||||||||||| | |||| |
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| T |
22153758 |
atttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaagg |
22153659 |
T |
|
| Q |
190 |
ttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtga |
284 |
Q |
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| |||||||||||||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |||||| |||||||| |
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| T |
22153658 |
tgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtga |
22153564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 284
Target Start/End: Complemental strand, 22209673 - 22209479
Alignment:
| Q |
90 |
atttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaagg |
189 |
Q |
| |
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||||||||||| | ||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |||||||||||| | |||| |
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| T |
22209673 |
atttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaagg |
22209574 |
T |
|
| Q |
190 |
ttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtga |
284 |
Q |
| |
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| |||||||||||||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |||||| |||||||| |
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| T |
22209573 |
tgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtga |
22209479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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