View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_low_5 (Length: 376)
Name: NF11106_low_5
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 25 - 368
Target Start/End: Original strand, 44320946 - 44321290
Alignment:
| Q |
25 |
tgccgaacactaatttctgtcaaggaaccttgttggtcaccattggtggggtttcctttcctctcccaagcatgttttcacaatgtgttttacttgatca |
124 |
Q |
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| T |
44320946 |
tgccgaacattaatttctgtcaaggaaccttgttggtcaccattagtggggtttcctttcctctcccaagcatgttttcacaatgtgttttacttgatca |
44321045 |
T |
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| Q |
125 |
tgttggtaggattcagctaaaaacgaaattctaaatcaaattacaatattttgatgtaatgaatgtgatgtgaggattctgctaattctttgtgacgata |
224 |
Q |
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| T |
44321046 |
tgttggtaggattcagctaaaaacgaaattctaaatcaaattacaatattttgatgtaatgaatgtgatgtgacgattctgctaattctttgtgacgata |
44321145 |
T |
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| Q |
225 |
-nnnnnnngcaaccatgttccttctcttctaatgtttaattggaactctttctaggagatacatgaggttaaattgaagcactcttcttgttagtgannn |
323 |
Q |
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| T |
44321146 |
ttttttttgcaaccatgttccttctcttctaatgtttaattggaactctttctaggagatacatgaggttaaattgaagtactcttcttgttagtgattt |
44321245 |
T |
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| Q |
324 |
nnnncaattttgctaatgtgttacttatcttttgttgtctctgct |
368 |
Q |
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| T |
44321246 |
ttttcaattttgctaatgtgttacttatcttttgttgtctctgct |
44321290 |
T |
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