View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11106_low_6 (Length: 350)
Name: NF11106_low_6
Description: NF11106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11106_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 127 - 334
Target Start/End: Complemental strand, 40978537 - 40978330
Alignment:
| Q |
127 |
gctagttaacatttccctatagtttgaagtgatttgaagataaaataattttgtttaggtaaattaatttgaaagtgaattaaactacaaatttgaagac |
226 |
Q |
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| T |
40978537 |
gctagttaacatttccctatagtttgaagtgatttgaagataaaataattttgtttgggtaaattaatttgaaagtgaattaaactacaaatttgaagac |
40978438 |
T |
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| Q |
227 |
aaaaatattataaatttgtttgttaaaacaataatttatgattttagagttgagacaaattaagtaaagattcccctaaagaaaaactaagtagggagtg |
326 |
Q |
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| T |
40978437 |
aaaaatattataaatttgtttgttaaaacaataatttatgattttagagttgagacaaattaagtaaagattcccctaaagaaaaactaagtagggagtg |
40978338 |
T |
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| Q |
327 |
tgttggac |
334 |
Q |
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| T |
40978337 |
tgttggac |
40978330 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 48551144 - 48551180
Alignment:
| Q |
108 |
cttaactagtgcctggggcgctagttaacatttccct |
144 |
Q |
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| T |
48551144 |
cttaactagtgcccggggcactagttaacatttccct |
48551180 |
T |
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