View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11107_high_2 (Length: 291)

Name: NF11107_high_2
Description: NF11107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11107_high_2
NF11107_high_2
[»] chr3 (30 HSPs)
chr3 (1-276)||(46491023-46491298)
chr3 (101-216)||(46480210-46480325)
chr3 (100-219)||(51944306-51944425)
chr3 (116-207)||(46498380-46498471)
chr3 (107-211)||(46506843-46506952)
chr3 (108-205)||(47413797-47413894)
chr3 (100-220)||(5160693-5160813)
chr3 (113-204)||(46553795-46553886)
chr3 (102-220)||(46474341-46474459)
chr3 (113-205)||(46532342-46532434)
chr3 (113-220)||(5156674-5156781)
chr3 (113-204)||(46544913-46545004)
chr3 (118-220)||(46484474-46484576)
chr3 (1-62)||(5156568-5156629)
chr3 (114-214)||(46236382-46236482)
chr3 (4-67)||(46498271-46498334)
chr3 (115-170)||(46539443-46539498)
chr3 (116-188)||(46526031-46526103)
chr3 (113-214)||(46535370-46535471)
chr3 (1-61)||(5160597-5160657)
chr3 (7-55)||(46480116-46480164)
chr3 (107-182)||(16025901-16025976)
chr3 (116-214)||(46548602-46548700)
chr3 (4-61)||(46526167-46526224)
chr3 (7-55)||(4581139-4581187)
chr3 (7-55)||(4613596-4613644)
chr3 (1-44)||(46548765-46548808)
chr3 (113-170)||(4581015-4581072)
chr3 (7-52)||(46236545-46236590)
chr3 (7-55)||(46484366-46484414)
[»] chr4 (4 HSPs)
chr4 (107-211)||(15556432-15556536)
chr4 (110-204)||(35155835-35155929)
chr4 (7-64)||(35162764-35162821)
chr4 (7-64)||(35155744-35155801)
[»] chr7 (7 HSPs)
chr7 (115-217)||(17736950-17737052)
chr7 (115-215)||(17718537-17718637)
chr7 (115-205)||(17699604-17699694)
chr7 (115-215)||(17708713-17708813)
chr7 (115-215)||(17736367-17736467)
chr7 (115-205)||(16722590-16722680)
chr7 (124-215)||(16730588-16730679)
[»] chr8 (5 HSPs)
chr8 (103-214)||(9675300-9675411)
chr8 (103-214)||(9692322-9692433)
chr8 (7-53)||(21463943-21463989)
chr8 (116-205)||(21463785-21463874)
chr8 (7-55)||(9692469-9692517)
[»] chr2 (2 HSPs)
chr2 (111-214)||(20168618-20168721)
chr2 (111-214)||(20359563-20359666)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 46491023 - 46491298
Alignment:
Q  1 tctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagccaccgtaactgaagtaatgactagcagtggcatgggtt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  46491023 tctaaaatatttcacaagtcttttattgatgtaaatgaagaaggcaccgaagctgttgcagccaccgcaactgaagtattcactagcagtggcatgggtt 46491122  T
Q  101 ttccaactcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcc 200  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491123 ttccaactcgactagactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcc 46491222  T
Q  201 tcttgctgggtgattttagcgtgccacactcgccaatagataaatagggaatttatttttcctgacaatatgatgt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491223 tcttgctgggtgattttagcgtgccacactcgccaatagataaatagggaatttatttttcctgacaatatgatgt 46491298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 46480210 - 46480325
Alignment:
Q  101 ttccaactcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcc 200  Q
    ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  46480210 ttccacctcggctagactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcc 46480309  T
Q  201 tcttgctgggtgattt 216  Q
    ||||||||||||||||    
T  46480310 tcttgctgggtgattt 46480325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 51944306 - 51944425
Alignment:
Q  100 tttccaactcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatc 199  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |    
T  51944306 tttccatctcaactagactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgctcaacc 51944405  T
Q  200 ctcttgctgggtgattttag 219  Q
    | ||| | ||||||| ||||    
T  51944406 cacttaccgggtgatcttag 51944425  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 46498380 - 46498471
Alignment:
Q  116 actttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgct 207  Q
    ||||||||||||||||||| ||||| ||||| || |||||||| ||||| ||||| ||| |||||||||| |||||| ||||||||||||||    
T  46498380 actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttgct 46498471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 46506952 - 46506843
Alignment:
Q  107 ctcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatc-----tttgttggacaggtgttcaatcct 201  Q
    |||||||||||||||||||||||||||| ||||| ||| | |||| |||||| | ||| ||||||||| ||     ||||||||||||||| ||||||||    
T  46506952 ctcgactagactttgtagctgaccacccattcttatttctaattaaagaagattggaccggaacaatcctctttaatttgttggacaggtgctcaatcct 46506853  T
Q  202 cttgctgggt 211  Q
    ||||||||||    
T  46506852 cttgctgggt 46506843  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 47413894 - 47413797
Alignment:
Q  108 tcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttg 205  Q
    |||||||||||||||||| |||||||||||||| ||| | ||||||||||| |  || | ||||||| ||||||||||||| ||| ||||||||||||    
T  47413894 tcgactagactttgtagccgaccaccctttcttatttctaattagagaagattcaaccgaaacaatcctctttgttggacatgtgctcaatcctcttg 47413797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 5160693 - 5160813
Alignment:
Q  100 tttccaactcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatc 199  Q
    ||||||||||  || || || |||||||||||||||||||| ||| ||||||||||||| | ||||||||| ||  ||||||||||||| ||  ||||||    
T  5160693 tttccaactcagcttgatttcgtagctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatc 5160792  T
Q  200 ctcttgctgggtgattttagc 220  Q
    |||||| || ||||| |||||    
T  5160793 ctcttgatgagtgatcttagc 5160813  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 46553886 - 46553795
Alignment:
Q  113 tagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctctt 204  Q
    |||||||||||||||||||||||||||||||| | ||||||||||| ||| |||| |||||  |||||||||| || ||  |||||||||||    
T  46553886 tagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctggtacaatactctttgttggccaagttctcaatcctctt 46553795  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 46474341 - 46474459
Alignment:
Q  102 tccaactcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcct 201  Q
    |||||||||| | || ||||||| ||| ||||| ||||| | | | |||||||| || ||| | ||||||||||||||||||||||||||| | ||||||    
T  46474341 tccaactcgaatggattttgtagttgatcacccattcttatatctaattagagatgatttggccggaacaatcatctttgttggacaggtgcttaatcct 46474440  T
Q  202 cttgctgggtgattttagc 220  Q
    |||| |||||||| |||||    
T  46474441 cttgatgggtgatcttagc 46474459  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 46532342 - 46532434
Alignment:
Q  113 tagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttg 205  Q
    |||||||||||||||||||||||||| ||||| |||| ||||| || ||| |||| |||||  |||||||||| || ||| ||||||||||||    
T  46532342 tagactttgtagctgaccaccctttcatgtttttgataagagacgatttgtctggtacaatactctttgttggccaagtgctcaatcctcttg 46532434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 5156674 - 5156781
Alignment:
Q  113 tagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtg 212  Q
    |||||||||||||||| ||||||||||| ||| | ||||||||| | | ||||||||| ||  ||||||||||||| ||| ||||||| |||| || |||    
T  5156674 tagactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttgatgagtg 5156773  T
Q  213 attttagc 220  Q
    || |||||    
T  5156774 atcttagc 5156781  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 46544913 - 46545004
Alignment:
Q  113 tagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctctt 204  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||  |  ||||| ||||||| ||  |||||||||||    
T  46544913 tagactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctttattggacaagttctcaatcctctt 46545004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 46484474 - 46484576
Alignment:
Q  118 tttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgatttt 217  Q
    ||||||||||| ||||| ||||| | | | |||||||| || ||| ||||||||||||||||||||||||| ||| | |||| ||||| |||||||| ||    
T  46484474 tttgtagctgatcacccattcttatatctaattagagatgatttggctggaacaatcatctttgttggacatgtgcttaatcatcttgatgggtgatctt 46484573  T
Q  218 agc 220  Q
    |||    
T  46484574 agc 46484576  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5156568 - 5156629
Alignment:
Q  1 tctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagc 62  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| ||||||    
T  5156568 tctaaaatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagctgctgcagc 5156629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 46236482 - 46236382
Alignment:
Q  114 agactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtga 213  Q
    ||||||||||||||| ||||||||| | ||| | ||||||||||  | ||| ||||||||| |||||| |||||||||| |||||||| ||| ||| |||    
T  46236482 agactttgtagctgatcaccctttcctatttctaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatga 46236383  T
Q  214 t 214  Q
    |    
T  46236382 t 46236382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 46498271 - 46498334
Alignment:
Q  4 aaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagccaccg 67  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||| |||||| ||| |||||||    
T  46498271 aaaatattccacaagtctttcattgaagtaaatgaagaaggcaccaaagctgctgcggccaccg 46498334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 46539443 - 46539498
Alignment:
Q  115 gactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaac 170  Q
    |||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||    
T  46539443 gactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaac 46539498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 46526103 - 46526031
Alignment:
Q  116 actttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaac-aatcatctttgttggaca 188  Q
    |||||||||| ||||||| |||||||||| | ||||||||||| ||||||||||| |||| |||||||||||||    
T  46526103 actttgtagcagaccacc-tttcttgtttctaattagagaagatttgactggaacaaatcctctttgttggaca 46526031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 46535370 - 46535471
Alignment:
Q  113 tagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtg 212  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||| ||  |||| |||||   ||||||||| || |||   |||||||||||||| ||    
T  46535370 tagactttgtagctgaccatcctttcttgtttttgataagagaagatttatctggtacaatacactttgttgggcaagtgcataatcctcttgctggatg 46535469  T
Q  213 at 214  Q
    ||    
T  46535470 at 46535471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5160597 - 5160657
Alignment:
Q  1 tctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcag 61  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||  | |||||||||||||    
T  5160597 tctaaaatatttcacaaatctttcattgaagtaaatgaagaaggtgctgaagctgttgcag 5160657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 46480116 - 46480164
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 55  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  46480116 atatttcacaagtctttcattgaagtaaatgaagaaggcactgaagctg 46480164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 16025901 - 16025976
Alignment:
Q  107 ctcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgt 182  Q
    ||||| |||| ||||||||||||||||||||||| ||| | ||||||||||| || || | ||||||| |||||||    
T  16025901 ctcgagtagattttgtagctgaccaccctttcttatttctaattagagaagatttaaccgaaacaatcctctttgt 16025976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 46548700 - 46548602
Alignment:
Q  116 actttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 214  Q
    |||||||||||||||| |||||| |||||||||| | |||||| |   ||||||| ||  ||||| ||||||| ||| |||||||| ||| ||||||||    
T  46548700 actttgtagctgaccatcctttcatgtttatgatcaaagaagattcttctggaactatactctttattggacaagtgctcaatccttttgttgggtgat 46548602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 46526224 - 46526167
Alignment:
Q  4 aaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcag 61  Q
    |||||||||||||||||| | ||||| |||||||| | |||||||||||||| |||||    
T  46526224 aaaatatttcacaagtctctcattgaagtaaatgagggaggcaccgaagctgctgcag 46526167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 4581187 - 4581139
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 55  Q
    ||||||||||||||||||||||| |||||||||| ||| || |||||||    
T  4581187 atatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctg 4581139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 4613644 - 4613596
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 55  Q
    ||||||||||||||||||||||| |||||||||| ||| || |||||||    
T  4613644 atatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctg 4613596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46548808 - 46548765
Alignment:
Q  1 tctaaaatatttcacaagtcttttattgacgtaaatgaagaagg 44  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||    
T  46548808 tctaaaatatttcacaagtctttcattgaagtaaaagaagaagg 46548765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 4581072 - 4581015
Alignment:
Q  113 tagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaac 170  Q
    |||| ||||| ||||||||||||||||||||| ||||  ||||||| ||| |||||||    
T  4581072 tagaatttgtggctgaccaccctttcttgtttttgatccgagaagatttgtctggaac 4581015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 46236590 - 46236545
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaag 52  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| ||||    
T  46236590 atatttcacaaatctttcattgaagtaaatgaagaaggcactgaag 46236545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 46484366 - 46484414
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 55  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||    
T  46484366 atattgcacaaatctttcattgaagtaaatgaagaaggcactgaagctg 46484414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 15556432 - 15556536
Alignment:
Q  107 ctcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgc 206  Q
    |||||||||||||||||||||||||||| ||||| ||| | || |||||||| ||||| || |||||| ||||||||||||||||| | |||||| ||||    
T  15556432 ctcgactagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatccttttgc 15556531  T
Q  207 tgggt 211  Q
    |||||    
T  15556532 tgggt 15556536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 35155835 - 35155929
Alignment:
Q  110 gactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctctt 204  Q
    ||||||||||| ||||||| ||||||||||| ||| | ||||||||||| |||||   ||||||| ||||||  ||||| |||||||| ||||||    
T  35155835 gactagactttatagctgatcaccctttcttatttttaattagagaagatttgacccaaacaatcctctttgccggacaagtgttcaaccctctt 35155929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 35162764 - 35162821
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagcca 64  Q
    ||||||||||||||||| ||||| ||||||||  ||||||||| ||||| ||||||||    
T  35162764 atatttcacaagtctttcattgaagtaaatgagaaaggcaccgtagctgctgcagcca 35162821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 35155744 - 35155801
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagcca 64  Q
    |||||||| |||| ||||||||| ||||| ||| |||||||  |||||||||||||||    
T  35155744 atatttcagaagtgttttattgaagtaaacgaaaaaggcactaaagctgttgcagcca 35155801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 17736950 - 17737052
Alignment:
Q  115 gactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 214  Q
    ||||||||||||||||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  17736950 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 17737049  T
Q  215 ttt 217  Q
    |||    
T  17737050 ttt 17737052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 17718537 - 17718637
Alignment:
Q  115 gactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 214  Q
    ||||||||||||||||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  17718537 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 17718636  T
Q  215 t 215  Q
    |    
T  17718637 t 17718637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 17699604 - 17699694
Alignment:
Q  115 gactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttg 205  Q
    ||||||||||||||||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| ||||||||||||    
T  17699604 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 17699694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 17708713 - 17708813
Alignment:
Q  115 gactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 214  Q
    |||||||| |||||||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  17708713 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 17708812  T
Q  215 t 215  Q
    |    
T  17708813 t 17708813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 17736367 - 17736467
Alignment:
Q  115 gactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 214  Q
    |||||||| |||||||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  17736367 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 17736466  T
Q  215 t 215  Q
    |    
T  17736467 t 17736467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 16722590 - 16722680
Alignment:
Q  115 gactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttg 205  Q
    |||||||| |||||||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| ||||||||||||    
T  16722590 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 16722680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 16730588 - 16730679
Alignment:
Q  124 gctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgatt 215  Q
    |||||||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||    
T  16730588 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatt 16730679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 9675411 - 9675300
Alignment:
Q  103 ccaactcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctc 202  Q
    |||||| || |||||||| |||| || ||||||||| | ||| | ||||||||||| | |||   ||||||||||||||  ||||||||  |||||||||    
T  9675411 ccaactggaatagactttatagccgatcaccctttcctatttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctc 9675312  T
Q  203 ttgctgggtgat 214  Q
    ||| ||||||||    
T  9675311 ttgttgggtgat 9675300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 9692433 - 9692322
Alignment:
Q  103 ccaactcgactagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctc 202  Q
    |||||| || |||||||| |||| || ||||||||| | ||| | ||||||||||| |||||   ||| ||||||||||  ||||||||  |||||||||    
T  9692433 ccaactggaatagactttatagccgatcaccctttcctatttctaattagagaagatttgacccaaacgatcatctttgccggacaggttctcaatcctc 9692334  T
Q  203 ttgctgggtgat 214  Q
    ||| ||||||||    
T  9692333 ttgttgggtgat 9692322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 21463989 - 21463943
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagc 53  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  21463989 atatttcacaagtcttttattgaagtaaacgaagaaggtaccgaagc 21463943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 21463874 - 21463785
Alignment:
Q  116 actttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttg 205  Q
    |||| |||||||| ||||||||||||||| |||| |||||||| ||| | ||||| ||  ||||| |||| || ||| ||||||||||||    
T  21463874 acttcgtagctgatcaccctttcttgtttttgatcagagaagatttgtccggaaccatactctttattgggcaagtgctcaatcctcttg 21463785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 9692517 - 9692469
Alignment:
Q  7 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 55  Q
    ||||||||||||||||| ||||| ||||| || |||||||| |||||||    
T  9692517 atatttcacaagtctttcattgaagtaaacgaggaaggcactgaagctg 9692469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 20168721 - 20168618
Alignment:
Q  111 actagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctggg 210  Q
    |||| |||||| || | ||||||| ||||| ||| | ||||| ||||| ||||| ||||||||| ||||||| || || ||| |||||||||||| || |    
T  20168721 actaaactttgaagttaaccaccccttcttatttctaattagggaagatttgacgggaacaatcctctttgtcgggcaagtgctcaatcctcttgatgag 20168622  T
Q  211 tgat 214  Q
    ||||    
T  20168621 tgat 20168618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 20359563 - 20359666
Alignment:
Q  111 actagactttgtagctgaccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctggg 210  Q
    |||| |||||| || | ||||||| ||||| ||| | ||||| ||||| ||||| ||||||||| ||||||| || || ||| |||||||||||| || |    
T  20359563 actaaactttgaagttaaccaccccttcttatttctaattagggaagatttgacgggaacaatcctctttgtcgggcaagtgctcaatcctcttgatgag 20359662  T
Q  211 tgat 214  Q
    ||||    
T  20359663 tgat 20359666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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