View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_high_11 (Length: 331)
Name: NF11108_high_11
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 30946297 - 30946003
Alignment:
| Q |
22 |
gcgcttattccagttgttggctctaaccgtcgcgaaatgccctcacgttgctttaaactgcagaaggtgtgcacacgccacaaatgacgttccaaaatca |
121 |
Q |
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| T |
30946297 |
gcgcttattccagctgttggctctaatcgtcgcgaaatgccctcacattgctttaaactgcagaaggtgtgcacacgccacaaatgacgttccaaaatca |
30946198 |
T |
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| Q |
122 |
gtattttcaaccaccacgattagcctttatccttgtaattaaaccttgtctttcatgagcaaacccaacacttggacattgattgtcacattctacgtct |
221 |
Q |
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| T |
30946197 |
gtattttcaaccaccacgattagcctttatccttgtaattaaaccttgtctttcatgagcgaacccaacacttggacattgattgtcacattctacgtct |
30946098 |
T |
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| Q |
222 |
caatgtgcaagaaggtctcatgagactcttaattgtctcatctgtttctcaagtagcatgtatattcaccaaggcttccaatcctagactattcc |
316 |
Q |
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| T |
30946097 |
caatgtgcaagaaggtctcatgagactcttaattgtcccatatgtttctcaagtagcatgtatattcactaaggcttccaatcctagaccattcc |
30946003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 30956484 - 30956261
Alignment:
| Q |
93 |
cacacgccacaaatgacgttccaaaatcagtattttcaaccaccacgattagcctttatccttgtaattaaaccttgtctttcatgagcaaacccaacac |
192 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||| | ||||| | |||||||||||| |||||||||| |
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| T |
30956484 |
cacacgctgcaaatgacgttccaaaatcagtattttcacccaccgcgattagcccttatccatgtagtgaaaccctatctttcatgagcgaacccaacac |
30956385 |
T |
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| Q |
193 |
ttggacattgattgtcacattctacgtctcaatgtgcaagaaggtctcatgagactcttaattgtctcatctgtttctcaagtagcatgtatattcacca |
292 |
Q |
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| T |
30956384 |
ttggacattgattgtcatgttcttcgtctcaaagtgcaagaagaactcatgagactcttacctgttccatctgtttctaaagtagcaggtatattcacta |
30956285 |
T |
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| Q |
293 |
aggcttccaatcctagactattcc |
316 |
Q |
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||||||||| |||| ||| ||||| |
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| T |
30956284 |
aggcttccattcctcgaccattcc |
30956261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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