View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11108_high_20 (Length: 203)
Name: NF11108_high_20
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 39795279 - 39795092
Alignment:
| Q |
1 |
agaccaaacaaaagatattagaaagagtagtttgagaaagcgtttgatgggaaagaagagtagcatgttatggttgaagaaagtgaagaaagaaatttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39795279 |
agaccaaacaaaagatattagaaagagtagtttgagaaagcgtttgatgggaaagaagagtagcatgttatggttgaagaaagtgaagaaagaaatttgg |
39795180 |
T |
|
| Q |
101 |
ccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatggatactgttgtttttaggatactctctg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39795179 |
ccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatggataccgttgtttttaggatactctctg |
39795092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 39774204 - 39774121
Alignment:
| Q |
94 |
aatttggccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatggatactgttgtttttaggat |
180 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| || ||||||||||| ||||||||||||| || ||||||| |||||||||| |
|
|
| T |
39774204 |
aatttggccttggagattctctgcatttaggttga---gacttgatcatattcaaacgacatttataaatactgtcatttttaggat |
39774121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 39791463 - 39791412
Alignment:
| Q |
128 |
aaacgacttgatcatcttcaaacga-cattcatggatactgttgtttttagg |
178 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
39791463 |
aaacgacttgatcatcttcaaacaatcattcatggatactgtcgtttttagg |
39791412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University