View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_high_9 (Length: 360)
Name: NF11108_high_9
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 104 - 349
Target Start/End: Complemental strand, 36703065 - 36702820
Alignment:
| Q |
104 |
gggaatgagcaaaaacagatgggagatgaacaattctcaaaccgacaagactttagccttaaattttgtttccttggttttattgaatagnnnnnnngaa |
203 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
36703065 |
gggaatgagcaaaaacatatgagagatgaacaattctcaaaccgacgagactttagccttaaattttgtttgcttggttttattgaatagtttttttgaa |
36702966 |
T |
|
| Q |
204 |
aaataaatgaagttctatcatattaattttgattcttatcaacttgggtcacatgtgcaacatataggatccgttattttctctcatgtcaaaagaaaag |
303 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36702965 |
aaataaatgaagctctatcatattaattttgattcttatcaacttgggtcacatgtgcaacatatagtatccgttattttctctcatgtcaaaagaaaag |
36702866 |
T |
|
| Q |
304 |
aaaaatcattagttatattctagttatctttttgactacctttctt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36702865 |
aaaaatcattagttatattctagttatctttttgactacctttctt |
36702820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 29405118 - 29405080
Alignment:
| Q |
104 |
gggaatgagcaaaaacagatgggagatgaacaattctca |
142 |
Q |
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|||||||||||||||||||| ||||| |||||||||||| |
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| T |
29405118 |
gggaatgagcaaaaacagataggagaagaacaattctca |
29405080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 12750292 - 12750329
Alignment:
| Q |
104 |
gggaatgagcaaaaacagatgggagatgaacaattctc |
141 |
Q |
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|||||||||||||||||||||||||| || |||||||| |
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| T |
12750292 |
gggaatgagcaaaaacagatgggagaagagcaattctc |
12750329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 2393934 - 2393893
Alignment:
| Q |
104 |
gggaatgagcaaaaacagatgggagatgaacaattctcaaac |
145 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||||||| |
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| T |
2393934 |
gggaatgagcaaaaacatatgggagaagagcaattctcaaac |
2393893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 14994783 - 14994742
Alignment:
| Q |
104 |
gggaatgagcaaaaacagatgggagatgaacaattctcaaac |
145 |
Q |
| |
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||||||||||||||||| |||||||| || |||||||||||| |
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|
| T |
14994783 |
gggaatgagcaaaaacaaatgggagaagagcaattctcaaac |
14994742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 32815788 - 32815751
Alignment:
| Q |
104 |
gggaatgagcaaaaacagatgggagatgaacaattctc |
141 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
32815788 |
gggaatgaccaaaaacagatgggagaagaacaattctc |
32815751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 23252886 - 23252846
Alignment:
| Q |
102 |
gagggaatgagcaaaaacagatgggagatgaacaattctca |
142 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
23252886 |
gagggaatgagcaaaagcagatgggagaagaacaatactca |
23252846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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