View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11108_low_1 (Length: 569)
Name: NF11108_low_1
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 6232978 - 6232433
Alignment:
| Q |
18 |
tgaaggactcaagtatattcacaaaaaagggtttgttcattgtgatttgaagttgcccaacattctcgtattcgagaacggaaacattaagatttcagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6232978 |
tgaaggactcaagtatattcacaaaaaagggtttgttcattgtgatttgaagttgcccaacattctcgtattcgagaacggaaacattaagatttcagat |
6232879 |
T |
|
| Q |
118 |
ttcggccttgcgaaagagataggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcaccagaagcagtgaatgatagtgttt |
217 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6232878 |
ttcgggcttgcgaaagagacaggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcaccagaagcagtgaatgatagtgtgt |
6232779 |
T |
|
| Q |
218 |
atgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgc---atggaatgagtcagatatgttaatgttgac |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
6232778 |
atgaatcgtcagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgccgcatggaatgaatcagatatgttgatgttgac |
6232679 |
T |
|
| Q |
315 |
gattcgaattggggttggagaagaattgccaaagattccagacgaattatcacaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttg |
414 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6232678 |
gattcgaattggtgttggagaagaattgccaaaaattccagaggaattatcacaagaaggaaaagattttttagaaaagtgtttcattaaggatcctttg |
6232579 |
T |
|
| Q |
415 |
agaagatggacagcagatatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtctt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6232578 |
agaagatggacagcagatatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtctt |
6232479 |
T |
|
| Q |
515 |
caccttctccaaaaacttacttcaatatgctcattgtgtttcttct |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6232478 |
caccttctccaaaaacttacttcaatatgctcattgtgtttcttct |
6232433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 104 - 512
Target Start/End: Complemental strand, 6222116 - 6221699
Alignment:
| Q |
104 |
ttaagatttcagatttcggccttgcgaaagagataggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcaccagaagcagt |
203 |
Q |
| |
|
|||||||||| ||||| |||||||| || |||| |||| || |||| |||| ||| | | || || |||||||| || ||||||||||||||| || |
|
|
| T |
6222116 |
ttaagatttcggattttggccttgctaaggagaaaggtctaaaacatggtggaaaattggaatgtaggggaactccattgtatatgtcaccagaagcggt |
6222017 |
T |
|
| Q |
204 |
gaatgatagtgtttatgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgcatggaatg-----ag---- |
294 |
Q |
| |
|
||| || |||||||||||||| || || ||||||||||||||||||||||| | ||||||||| ||| || ||| |||||||||| || |
|
|
| T |
6222016 |
gaacgagagtgtttatgaatcaccggcagatatatgggctcttggttgcgctattgtggagatggctacgggtaaacatgcatggaatgtaagcagcggt |
6221917 |
T |
|
| Q |
295 |
tcagatatgttaatgttgacgattcgaattggggttggagaagaattgccaaagattccagacgaattatcacaagaaggaaaagattttctagaaaagt |
394 |
Q |
| |
|
||| |||||| |||| ||||||||||||| | ||| |||| || ||||||||| ||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
6221916 |
tcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcacaagtcggaaaagattttctcgaaaagt |
6221817 |
T |
|
| Q |
395 |
gtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagt |
494 |
Q |
| |
|
||||||| |||||||||| | ||||||||| ||||| ||||| || |||||| ||||||||| | || ||||||||||||| | || || ||||| | |
|
|
| T |
6221816 |
gtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaaacatgagtttatctcaggtgatgaaactgtttcattggtgaaagagttgat |
6221717 |
T |
|
| Q |
495 |
tgatgagttgccattgtc |
512 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6221716 |
caatgagttgccattgtc |
6221699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University