View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11108_low_10 (Length: 361)

Name: NF11108_low_10
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11108_low_10
NF11108_low_10
[»] chr8 (10 HSPs)
chr8 (68-349)||(34219021-34219302)
chr8 (89-156)||(40991763-40991830)
chr8 (80-162)||(4154741-4154823)
chr8 (80-162)||(4154356-4154437)
chr8 (111-157)||(4715308-4715354)
chr8 (89-155)||(37544572-37544638)
chr8 (108-138)||(40417618-40417648)
chr8 (203-290)||(4154609-4154698)
chr8 (110-162)||(9620751-9620803)
chr8 (80-156)||(41972159-41972235)
[»] chr6 (7 HSPs)
chr6 (90-162)||(12092557-12092629)
chr6 (110-162)||(6071163-6071215)
chr6 (80-162)||(10074438-10074520)
chr6 (80-138)||(33605976-33606034)
chr6 (89-139)||(30618713-30618763)
chr6 (101-138)||(33605676-33605713)
chr6 (79-139)||(34661707-34661767)
[»] chr4 (10 HSPs)
chr4 (68-156)||(7147721-7147808)
chr4 (103-162)||(28034253-28034312)
chr4 (79-156)||(41603270-41603347)
chr4 (110-156)||(15841447-15841493)
chr4 (116-153)||(11348410-11348447)
chr4 (101-162)||(34544128-34544189)
chr4 (110-156)||(15841063-15841109)
chr4 (79-132)||(10370108-10370161)
chr4 (102-155)||(23556946-23556999)
chr4 (81-138)||(39099851-39099908)
[»] chr2 (14 HSPs)
chr2 (80-156)||(33953852-33953928)
chr2 (101-164)||(33561524-33561587)
chr2 (109-155)||(2336654-2336700)
chr2 (89-139)||(13154479-13154529)
chr2 (79-156)||(31385737-31385814)
chr2 (109-156)||(2323646-2323693)
chr2 (110-156)||(3594259-3594305)
chr2 (101-162)||(30313200-30313260)
chr2 (80-156)||(962599-962675)
chr2 (101-156)||(29874104-29874159)
chr2 (101-156)||(41678448-41678503)
chr2 (101-162)||(29873612-29873673)
chr2 (113-161)||(30312823-30312871)
chr2 (110-162)||(30323495-30323547)
[»] chr3 (7 HSPs)
chr3 (80-162)||(39336304-39336386)
chr3 (111-164)||(54451249-54451302)
chr3 (80-139)||(33153558-33153616)
chr3 (103-162)||(47964593-47964652)
chr3 (109-157)||(2417347-2417395)
chr3 (89-149)||(30399662-30399722)
chr3 (112-156)||(46546406-46546450)
[»] chr5 (5 HSPs)
chr5 (80-172)||(31509624-31509716)
chr5 (101-172)||(31509753-31509824)
chr5 (107-152)||(6557471-6557516)
chr5 (80-164)||(10351246-10351330)
chr5 (80-156)||(41632783-41632859)
[»] chr1 (4 HSPs)
chr1 (79-156)||(22793278-22793355)
chr1 (80-157)||(22077575-22077652)
chr1 (104-156)||(66553-66605)
chr1 (101-133)||(47379889-47379921)
[»] chr7 (5 HSPs)
chr7 (80-139)||(10341833-10341892)
chr7 (109-154)||(42282101-42282146)
chr7 (89-138)||(42730326-42730375)
chr7 (102-162)||(4124163-4124223)
chr7 (110-162)||(37345949-37346001)
[»] scaffold0807 (1 HSPs)
scaffold0807 (109-162)||(3108-3161)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 68 - 349
Target Start/End: Complemental strand, 34219302 - 34219021
Alignment:
Q  68 atatgttatgcagcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattgtcctg 167  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34219302 atatgttatgcagcaaatggcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattgtcctg 34219203  T
Q  168 aggttatattatggataaaaatgtagtagagtcgaggttgctcttgcctaatatgagtggtccctcagactcccctcatgaaccaacgatggtatcagag 267  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  34219202 aggttatattatagataaaaatgtagtagagtcgaggttgctcttacctaatatgagtggtccctcaggctcccctcatgaaccaatgatggtatcagag 34219103  T
Q  268 tcgaggtttgacaagggttcaactgtttgaccgactccttgtgtcgtaagtcttcctgactaggtgtttaggccacaggttc 349  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34219102 tcgaggtttgacaagggtttaactgtttgaccgactccttgtgtcgtaagtcttcctgactaggtgtttaggccacaggttc 34219021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 40991763 - 40991830
Alignment:
Q  89 agttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  40991763 agttagaagtcccacattgcttagaaaagtggaggttgaacacttcataagtgagaggacccataaac 40991830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 4154823 - 4154741
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||| ||| ||||| | ||| |||||| | |||||||||||||||||||||||||||||| || |||| ||||||||| ||||    
T  4154823 gcaagtgtgagttatatgtcccacatctgatagaaaagtggaggttgaacactttataagtgaaaggacccataaactcattg 4154741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 4154437 - 4154356
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||||| ||||| | |||  ||||| | |||||||||||||||||||||||||||||| |||| || ||||||||| ||||    
T  4154437 gcaaatgtgagttatatgtcctacatcagatagaaaagtggaggttgaacactttataagtgaga-gacccataaactcattg 4154356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 4715308 - 4715354
Alignment:
Q  111 agaaaagtggaggttgaacactttataagagagaggatccataaact 157  Q
    ||||||||||||||||||||||||||||  |||| |||| |||||||    
T  4715308 agaaaagtggaggttgaacactttataaatgagacgatctataaact 4715354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 37544638 - 37544572
Alignment:
Q  89 agttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaa 155  Q
    ||||| |||||||||||||| || || |||  ||||||||||| |||||||| |||||| |||||||    
T  37544638 agttataagtcgcacatcggataaaatagtaaaggttgaacacattataagaaagaggacccataaa 37544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 138
Target Start/End: Complemental strand, 40417648 - 40417618
Alignment:
Q  108 gttagaaaagtggaggttgaacactttataa 138  Q
    |||||||||||||||||||||||||||||||    
T  40417648 gttagaaaagtggaggttgaacactttataa 40417618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 4154698 - 4154609
Alignment:
Q  203 ggttgctcttgccta-atatgagtggtccctcagactcccctcatgaaccaacgatggtatcagagtcgaggtttgac-aagggttcaac 290  Q
    ||||||||| ||||| || ||||||||||||| ||||||| |||||| |||||  |||||||| || |||| || ||| |||||||||||    
T  4154698 ggttgctctggcctagatgtgagtggtccctcggactcccttcatgacccaacagtggtatcaaagccgagtttcgacgaagggttcaac 4154609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 9620803 - 9620751
Alignment:
Q  110 tagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    ||||||||| || ||||| ||||||||||| ||||||| ||||||||| ||||    
T  9620803 tagaaaagtagaagttgatcactttataagtgagaggacccataaactcattg 9620751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 41972159 - 41972235
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||| ||| ||||| | ||| |||||||| |||||||||  ||||||||||| ||||||| || |||| ||||||||    
T  41972159 gcaagtgtgagttatatgtcccacatcggatagaaaagtaaaggttgaacaccttataagtgataggacccataaac 41972235  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 12092629 - 12092557
Alignment:
Q  90 gttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||| ||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  12092629 gttagatgtcccacatcggatagaaaagtggaggttgagcactttataagtgagaggatccataaactcattg 12092557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 6071163 - 6071215
Alignment:
Q  110 tagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  6071163 tagaaaagtggaggttgaacactttataagtgagatgatccataaactcattg 6071215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 10074520 - 10074438
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||| ||| ||||||| ||| |||||||| |||||||||  ||||||||||| |||||||  |||||| ||||||||| ||||    
T  10074520 gcaagtgtgagttagaggtcccacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaactcattg 10074438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 33605976 - 33606034
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataa 138  Q
    |||||||| ||||| | ||| |||||||  |||||||||||||||||||||||||||||    
T  33605976 gcaaatgtaagttatatgtcccacatcgaatagaaaagtggaggttgaacactttataa 33606034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 30618763 - 30618713
Alignment:
Q  89 agttagaagtcgcacatcggttagaaaagtggaggttgaacactttataag 139  Q
    |||||||||||  |||||||||  ||||||||||| |||||||||||||||    
T  30618763 agttagaagtcctacatcggttgaaaaagtggaggatgaacactttataag 30618713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 33605676 - 33605713
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactttataa 138  Q
    |||||| | |||||||||||||||||||||||||||||    
T  33605676 cacatcagatagaaaagtggaggttgaacactttataa 33605713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 34661767 - 34661707
Alignment:
Q  79 agcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataag 139  Q
    ||||| ||| |||||||| || |||||   ||||||||||||||||||| |||||||||||    
T  34661767 agcaagtgtgagttagaaatctcacattacttagaaaagtggaggttgatcactttataag 34661707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 7147808 - 7147721
Alignment:
Q  68 atatgttatgcagcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    ||||||| |||||||| ||| ||||||||||| ||||| | |||||||||||||||||||||||||| |||| ||||||| || |||||    
T  7147808 atatgttgtgcagcaagtgtgagttagaagtctcacattgcttagaaaagtggaggttgaacacttt-taagtgagaggacccgtaaac 7147721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 28034253 - 28034312
Alignment:
Q  103 catcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  28034253 catcggatagaaaagtggaggttgaacactttataagtgagagaacccataaacttattg 28034312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 41603347 - 41603270
Alignment:
Q  79 agcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    ||||||||| ||||||||||| ||| | | || |||||||||||||||| ||||||||||| |||| || ||||||||    
T  41603347 agcaaatgtgagttagaagtcccacgttgcttggaaaagtggaggttgagcactttataagtgagaagacccataaac 41603270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 15841493 - 15841447
Alignment:
Q  110 tagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||    
T  15841493 tagaaaagtggaggttgaacactttgtaagtgagaggattcataaac 15841447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 11348447 - 11348410
Alignment:
Q  116 agtggaggttgaacactttataagagagaggatccata 153  Q
    |||||||||||||||||||||||| |||||||||||||    
T  11348447 agtggaggttgaacactttataagtgagaggatccata 11348410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 34544128 - 34544189
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||||  |||||||||||||||||| ||||||||||  ||||||| ||||||||| ||||    
T  34544128 cacatcgaatagaaaagtggaggttgatcactttataaatgagaggacccataaactcattg 34544189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 15841109 - 15841063
Alignment:
Q  110 tagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  15841109 tagaaaagtggaggctgaacattttataagtgagaggatctataaac 15841063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 10370161 - 10370108
Alignment:
Q  79 agcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacact 132  Q
    ||||| ||| ||||||||||  ||||||||||||||| |||||||||| |||||    
T  10370161 agcaagtgtgagttagaagttccacatcggttagaaacgtggaggttggacact 10370108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 23556999 - 23556946
Alignment:
Q  102 acatcggttagaaaagtggaggttgaacactttataagagagaggatccataaa 155  Q
    ||||||| ||||||||||||||||||||| |||||||   |||| |||||||||    
T  23556999 acatcggatagaaaagtggaggttgaacattttataaataagagaatccataaa 23556946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 39099908 - 39099851
Alignment:
Q  81 caaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataa 138  Q
    ||||||| |||||||||||  ||||  |||| |||||||||||||||||| |||||||    
T  39099908 caaatgtgagttagaagtcatacatatgttaaaaaagtggaggttgaacattttataa 39099851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 33953928 - 33953852
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||||||| ||||| ||||| |||||| | ||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  33953928 gcaaatgtgagttataagtcccacatcagatagaaaagtggaggttgaacactatataagtgagaggacccataaac 33953852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 33561587 - 33561524
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattgtc 164  Q
    |||||| | |||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||    
T  33561587 cacatcagatagaaaagtggaggttaaacactttataagtgagaggacccataaactcattgtc 33561524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 2336654 - 2336700
Alignment:
Q  109 ttagaaaagtggaggttgaacactttataagagagaggatccataaa 155  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  2336654 ttagaaaagtggaggttgaacactttataagtgagaggacccataaa 2336700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 13154529 - 13154479
Alignment:
Q  89 agttagaagtcgcacatcggttagaaaagtggaggttgaacactttataag 139  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  13154529 agttagaagtctcacattgcttagaaaagtggaggttgaacactttataag 13154479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 31385737 - 31385814
Alignment:
Q  79 agcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    ||||| ||| |||||||||||  ||||||||||||||| |||||||||| ||| ||||||| || |||| ||||||||    
T  31385737 agcaagtgtgagttagaagtctgacatcggttagaaaaatggaggttgagcaccttataagtgaaaggacccataaac 31385814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 2323646 - 2323693
Alignment:
Q  109 ttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||    
T  2323646 ttagaaaaatggaggttggacactttataagtgagaggatccataaac 2323693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 3594305 - 3594259
Alignment:
Q  110 tagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||    
T  3594305 tagaaaagtggaggtcgaacactttataagtgataggatccataaac 3594259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 30313200 - 30313260
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||||| |||||||||||||||||||||| ||||||| ||||||| ||| ||||| ||||    
T  30313200 cacatcggatagaaaagtggaggttgaacac-ttataagtgagaggacccaaaaactcattg 30313260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 962599 - 962675
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||| ||| ||||| | ||| |||||||| |||||||||  ||||||||||| ||||||| ||||||| ||||||||    
T  962599 gcaagtgtgagttatatgtcccacatcggatagaaaagtaaaggttgaacaccttataagtgagaggacccataaac 962675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 29874159 - 29874104
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||||| | |||||||||||||||||||||||||||||  | ||||| ||||||||    
T  29874159 cacatcagatagaaaagtggaggttgaacactttataattgggaggacccataaac 29874104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 41678503 - 41678448
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||||| | |||||||| ||||||| ||||||||||||| ||||||| ||||||||    
T  41678503 cacatcagatagaaaaggggaggttaaacactttataagtgagaggacccataaac 41678448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 29873673 - 29873612
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||| | ||||||||||||||||||||| |||||||| | |||||  |||||||| ||||    
T  29873673 cacatcagatagaaaagtggaggttgaacattttataagtgggaggactcataaactcattg 29873612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 30312823 - 30312871
Alignment:
Q  113 aaaagtggaggttgaacactttataagagagaggatccataaacttatt 161  Q
    ||||||||||||||||||||||||||   ||| || |||||||||||||    
T  30312823 aaaagtggaggttgaacactttataacttagatgacccataaacttatt 30312871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 30323495 - 30323547
Alignment:
Q  110 tagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    ||||||| |||||||||||||||||| ||| ||||||| | ||||||| ||||    
T  30323495 tagaaaattggaggttgaacactttagaagtgagaggacctataaactcattg 30323547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 39336386 - 39336304
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||| ||| ||||| | ||| |||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||| ||||    
T  39336386 gcaagtgtgagttatatgtcccacatcggatagaaagttggaggttgaacactttataagtgagaggatccataaactcattg 39336304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 54451302 - 54451249
Alignment:
Q  111 agaaaagtggaggttgaacactttataagagagaggatccataaacttattgtc 164  Q
    |||||| ||||||||||||||||||| || |||| |||||||| ||||||||||    
T  54451302 agaaaaatggaggttgaacactttatgagtgagatgatccatatacttattgtc 54451249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 33153558 - 33153616
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataag 139  Q
    |||||||| ||||||||||| || || | || ||||||||||||||||||||||||||||    
T  33153558 gcaaatgtgagttagaagtctcatattgctt-gaaaagtggaggttgaacactttataag 33153616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 47964652 - 47964593
Alignment:
Q  103 catcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||| |||||| ||||||||||||| || |||||| ||||||| |||||||| |||||    
T  47964652 catcggatagaaatgtggaggttgaacgctatataagtgagaggacccataaacctattg 47964593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 2417347 - 2417395
Alignment:
Q  109 ttagaaaagtggaggttgaacactttataagagagaggatccataaact 157  Q
    |||||||||||||| ||||||| |||||||| ||||| ||| |||||||    
T  2417347 ttagaaaagtggagattgaacattttataagtgagagaatctataaact 2417395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 30399722 - 30399662
Alignment:
Q  89 agttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatc 149  Q
    ||||||||||  ||||| | ||| |||| ||||||||||||| |||||||| |||||||||    
T  30399722 agttagaagttccacattgtttaaaaaattggaggttgaacattttataagtgagaggatc 30399662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 46546450 - 46546406
Alignment:
Q  112 gaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||| |||||||||||||||||||||||  |||| ||||||||||    
T  46546450 gaaatgtggaggttgaacactttataagttagagaatccataaac 46546406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 31509624 - 31509716
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattgtcctgaggtt 172  Q
    |||| ||| ||||| | ||| |||||||| |||||||||||||||||| ||||||||||| |||||||  |||||||| |||| | |||||||    
T  31509624 gcaagtgtgagttatatgtctcacatcggatagaaaagtggaggttgagcactttataagtgagaggactcataaactcattgccttgaggtt 31509716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 31509753 - 31509824
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattgtcctgaggtt 172  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||||  |||||||| |||| | |||||||    
T  31509753 cacatcggatagaaaagtggaggttgagcactttataagtgagaggactcataaactcattgccttgaggtt 31509824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 6557516 - 6557471
Alignment:
Q  107 ggttagaaaagtggaggttgaacactttataagagagaggatccat 152  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  6557516 ggttagaaaagtgtaggttgagcactttataagtgagaggatccat 6557471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 10351330 - 10351246
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattgtc 164  Q
    |||| ||| ||||||||||| ||||| || || ||||| |||||||||||| |||||| | || | || ||||||||| ||||||    
T  10351330 gcaagtgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtc 10351246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 41632783 - 41632859
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    |||| ||| ||||| | ||| |||||||| |||||||||  ||||||||||| |||||||  |||||| ||||||||    
T  41632783 gcaagtgtaagttatatgtctcacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaac 41632859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 22793278 - 22793355
Alignment:
Q  79 agcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    ||||| ||| ||||| | ||| |||||||  ||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  22793278 agcaagtgtgagttatatgtcccacatcgtatagaaaagtagaggttgaaaactttataagtgagaggatccataaac 22793355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 22077652 - 22077575
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataagagagaggatccataaact 157  Q
    |||| ||| ||||| | ||| |||||||| |||||||||  ||||||||||| |||||||  |||||| |||||||||    
T  22077652 gcaagtgtgagttatatgtctcacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaact 22077575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 66605 - 66553
Alignment:
Q  104 atcggttagaaaagtggaggttgaacactttataagagagaggatccataaac 156  Q
    ||||| |||||||||  ||||||||||| |||||||  |||||||||||||||    
T  66605 atcggatagaaaagtaaaggttgaacaccttataagtaagaggatccataaac 66553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 47379921 - 47379889
Alignment:
Q  101 cacatcggttagaaaagtggaggttgaacactt 133  Q
    |||||||| ||||||||||||||||||||||||    
T  47379921 cacatcggatagaaaagtggaggttgaacactt 47379889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 10341833 - 10341892
Alignment:
Q  80 gcaaatgtcagttagaagtcgcacatcggttagaaaagtggaggttgaacactttataag 139  Q
    |||||| | ||||| | ||| |||||||| ||||||||||||||||||||||||||||||    
T  10341833 gcaaatataagttatatgtctcacatcggatagaaaagtggaggttgaacactttataag 10341892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 42282146 - 42282101
Alignment:
Q  109 ttagaaaagtggaggttgaacactttataagagagaggatccataa 154  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||    
T  42282146 ttagaaaagtggaggttgaacactttataagtgaaaggacccataa 42282101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 42730326 - 42730375
Alignment:
Q  89 agttagaagtcgcacatcggttagaaaagtggaggttgaacactttataa 138  Q
    ||||||||||  |||||||||| |||||||||||||||| || |||||||    
T  42730326 agttagaagttccacatcggtttgaaaagtggaggttgatcattttataa 42730375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 4124223 - 4124163
Alignment:
Q  102 acatcggttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    ||||||||||||||| | ||||||  |||||||||||| ||||||| | ||||||| ||||    
T  4124223 acatcggttagaaaatttgaggtttgacactttataagtgagaggaccaataaactcattg 4124163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 37345949 - 37346001
Alignment:
Q  110 tagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||||||||||||| |||| |||||||| |||| || |||||||| |||||    
T  37345949 tagaaaagtggaggttaaacattttataagtgagaagacccataaacatattg 37346001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 3108 - 3161
Alignment:
Q  109 ttagaaaagtggaggttgaacactttataagagagaggatccataaacttattg 162  Q
    |||||||||||||||||  |||||||||||| ||||| ||| ||||||| ||||    
T  3108 ttagaaaagtggaggttatacactttataagtgagagcatcaataaactcattg 3161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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