View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_low_12 (Length: 337)
Name: NF11108_low_12
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 152 - 333
Target Start/End: Complemental strand, 35230528 - 35230347
Alignment:
| Q |
152 |
catcaaattatttttgctcaaaagagtttagccgcaaaattcatgttaaaaatgcaaaat-ccaagcttaaactcgcatctcgacatatcaagttgtttt |
250 |
Q |
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| T |
35230528 |
catcaaattatttttgctcaaaagagtttagccgcaaaattcatgttagaaatgcaaaattccaagcttaaactcgcatctcgacatatcaaattttttt |
35230429 |
T |
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| Q |
251 |
aagaacctctgacatatcaaatgtctctataattattatctaaattatatttatgagacgatttaaatatatttcttctctct |
333 |
Q |
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| T |
35230428 |
aagaacctc-gacatatcaaatgtctctacaattattatctaaattatatttatgagatgatttaaatatatttcttgtctct |
35230347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 35230699 - 35230562
Alignment:
| Q |
17 |
agaagaatcagtgtttaggtatgaaaatgttactgaggttcctgctaccatggattggagagaaagaggagctgttactccaatcaagcatcaacacctt |
116 |
Q |
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| T |
35230699 |
agaagaatcagtgtttaggtatgaaaatgttactgaggttcctgctaccatggattggagagaaagaggagctgttactccaatcaagcatcaacatctt |
35230600 |
T |
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| Q |
117 |
tgtggtaaaaatttaaaaataataattaaggcatgcat |
154 |
Q |
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| T |
35230599 |
tgtggtaaaaattaaaaaataataattaagccatgcat |
35230562 |
T |
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