View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_low_15 (Length: 314)
Name: NF11108_low_15
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 51 - 293
Target Start/End: Original strand, 43460819 - 43461050
Alignment:
| Q |
51 |
tgatactaatctctcacgttattcttccaccgtaaacaatgacggcgacattttgagagtaaattgcaaatgaaaacaatgaaatcgcattaacagctag |
150 |
Q |
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| T |
43460819 |
tgatactaatctctcgcgttattcttccaccgtaaacaatgatggcgacatattgagagtaaattgcaaatgaaaaca---------cattaacagctag |
43460909 |
T |
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| Q |
151 |
caagaaaacacactcacatatttttatttttaccctccggttctcaataattgttccactcaaagaatcaaactcgagtttatccaaacgatttgtcttt |
250 |
Q |
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| T |
43460910 |
caagaaaacacac--acatatttttatttttaccctccggttctcaataattgttccactcaagtaatcaaactcaaatttatccaaatgatttgtcctt |
43461007 |
T |
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| Q |
251 |
tagtaaagttcatcagctgcttgagttcaataaatttattaca |
293 |
Q |
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| T |
43461008 |
tagtgaagttcatcagctgcttgagctcaataaatttattaca |
43461050 |
T |
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