View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_low_19 (Length: 242)
Name: NF11108_low_19
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 8766072 - 8766285
Alignment:
| Q |
20 |
tctatgatacatcattatcctaattttcccctctaaaataaaaataggtatcc------taatcctaattatataaaagcaagcagcaaagttgaattat |
113 |
Q |
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| T |
8766072 |
tctatgatacatcattatcctaattttcccctctaaaataaaaacaggcatcctaatcctaatcctaattatataaaagcaagcagcaaagttgaattat |
8766171 |
T |
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| Q |
114 |
gtcccttaatctaataattactatatttattagacaacaataattgatcccaaaaacataatgaattgaatatcgtggattgaaattaacataccaataa |
213 |
Q |
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|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8766172 |
gtcccttaatctaataattaataaatttattagaccacaataattgatcccaaaaacataatgaattgaatatcgtggattgaaattaacataccaataa |
8766271 |
T |
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| Q |
214 |
agttttagcctatg |
227 |
Q |
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|||||||||||||| |
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| T |
8766272 |
agttttagcctatg |
8766285 |
T |
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