View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_low_2 (Length: 535)
Name: NF11108_low_2
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Original strand, 45242910 - 45243430
Alignment:
| Q |
11 |
cagagataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaagaggnnnnnnnntcaattcatatcgagattctttctttaactaa |
110 |
Q |
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| T |
45242910 |
cagaaataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaagaggaaaaaaaatcaattcatatcgaggttctttctttaactaa |
45243009 |
T |
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| Q |
111 |
atttatatgaaaatgaattgttgtctagcttaatgcttttcttcgtcacacacaaaacatacactctttattgtttctttcgaaattcaacatgcagtca |
210 |
Q |
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| T |
45243010 |
atttatatgaaaatgaattgttgtctagcttaatgcttttcttcgtcacacacacaacatacactctttattgtttctttcgaaattcaacatgcagtca |
45243109 |
T |
|
| Q |
211 |
ttttcaaaatcatgtaaaaatatgtacataaacaaacgatacaaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45243110 |
ttttcaaaatcatgtaaaaatatgtacataaacaaacgacacaaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaa |
45243209 |
T |
|
| Q |
311 |
atacatacaccataatatatga--------tgtttatccctatctctcttattctttatcttctagaacttacagata----nnnnnnnnnnnnnnnnnc |
398 |
Q |
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| T |
45243210 |
atacatacaccataaaatatgatacagatgtgtttatccctatctctcttattctttatcttctagaacttacagatatttttttttaaaaaaaaaaaac |
45243309 |
T |
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| Q |
399 |
atgcaaaaaccaatggatactgtacctgatatcaaaattttgatgtccagacatcatttctcaatcaaaaaagtttaggtaccgatatcatgcgatggta |
498 |
Q |
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| T |
45243310 |
atgcaaaaaccaatggatac--aacctgatatcaaaattttgatgtccagacatgatttctcaatcaaaaaagtttaagtaccgatatcatgtgatggta |
45243407 |
T |
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| Q |
499 |
tcattgaaatcaactgatatgca |
521 |
Q |
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| T |
45243408 |
tcattgaaatcaactgatatgca |
45243430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 517
Target Start/End: Original strand, 45230114 - 45230183
Alignment:
| Q |
449 |
acatcatttctcaatcaaaaaagtttaggtaccgat-atcatgcgatggtatcattgaaatcaactgata |
517 |
Q |
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| T |
45230114 |
acatcatttctcaatcaaaaaagtttaactcccgataatcatatgatgagatcattgaaatcaactgata |
45230183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 45237442 - 45237480
Alignment:
| Q |
425 |
tgatatcaaaattttgatgtccagacatcatttctcaat |
463 |
Q |
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| T |
45237442 |
tgatatcaaaactttgatgtccaaacatcatttctcaat |
45237480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 8576934 - 8576845
Alignment:
| Q |
236 |
acataaacaaacgatacaa-aaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccata |
324 |
Q |
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| T |
8576934 |
acataaacaaactacacaagaaaggtgattcaatttgacctctaacaaaatgcagttgtgttatttcaacatcaaaatacatacaccata |
8576845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 8580242 - 8580177
Alignment:
| Q |
79 |
tcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaat |
144 |
Q |
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||||||||||| || |||||||||||||| |||||||| ||||||| || ||||||| |||||| |
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| T |
8580242 |
tcaattcatattgatattctttctttaacctaatttataagaaaatggatcattgtctaacttaat |
8580177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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