View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_low_21 (Length: 217)
Name: NF11108_low_21
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 12774769 - 12774652
Alignment:
| Q |
1 |
tgtaaattttgctccctttgaaaccctttttgacacacttcacatacaaatctgtttgttgccattaggctcttgggagatagtgctatcacttctgcat |
100 |
Q |
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| T |
12774769 |
tgtaaattttgctccctttggaaccctttttggcacacttcacatacaaatctgtttgttgccattaggctcttgggagatagtgctatcacttctgcat |
12774670 |
T |
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| Q |
101 |
ctggatctgttttcattg |
118 |
Q |
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| T |
12774669 |
ctggatctgttttcattg |
12774652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12804805 - 12804920
Alignment:
| Q |
1 |
tgtaaattttgctccctttgaaaccctttttgacacacttcacatacaaatctgtttgttgccattaggctcttgggagatagtgctatcacttctgcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
12804805 |
tgtaaattttgctccctttgaaaccctttttgacacacttcacatacaaatctgtttgttgccattagggtctttggagatagtgctatcacctctgcat |
12804904 |
T |
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| Q |
101 |
ctggatctgttttcat |
116 |
Q |
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| T |
12804905 |
ctggatctgttttcat |
12804920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 42286944 - 42286842
Alignment:
| Q |
6 |
attttgctccctttgaaaccctttttgacacacttcacatacaaatctgtttgttgccattaggctcttgggagatagtgctatcacttctgcatctgga |
105 |
Q |
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| T |
42286944 |
attttgctccctttgaaaccctttattgcaaacctcacatataaatctatttgttgccattagagtcttgggagatagtgctatcacttctgcatctgga |
42286845 |
T |
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| Q |
106 |
tct |
108 |
Q |
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||| |
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| T |
42286844 |
tct |
42286842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 50789113 - 50789230
Alignment:
| Q |
1 |
tgtaaattttgctccctttgaaaccctttttgacacacttcacatacaaatctgtttgttgccattaggctcttgggagatagtgctatcacttctgcat |
100 |
Q |
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|||| ||||||||| ||||| |||||||| | || || ||||| | ||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
50789113 |
tgtagattttgctctctttggaaccctttgttgcatacctcacaaataaacctgtttgttgccattagggtcttgggagatagtgctatcacctctgcat |
50789212 |
T |
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| Q |
101 |
ctggatctgttttcattg |
118 |
Q |
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|||||||||||| ||||| |
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| T |
50789213 |
ctggatctgtttccattg |
50789230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 36989167 - 36989063
Alignment:
| Q |
6 |
attttgctccctttgaaaccctttttgacacacttcacatacaaatctgtttgttgccattaggctcttgggagatagtgctatcacttctgcatctgga |
105 |
Q |
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|||||| || |||||||| || || | ||| | ||||||||| ||||||||||| |||||||| | | || ||||||||||||||||| ||| |||| |
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| T |
36989167 |
attttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccattagtgttgttggtgatagtgctatcacttcagcacttgga |
36989068 |
T |
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| Q |
106 |
tctgt |
110 |
Q |
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||||| |
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| T |
36989067 |
tctgt |
36989063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 39795264 - 39795185
Alignment:
| Q |
138 |
tattagaatgagtattttgagaaagcgattgatgagaaataagattagcatgttatcgttgaagaaagtgaataaagaaa |
217 |
Q |
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| T |
39795264 |
tattagaaagagtagtttgagaaagcgtttgatgggaaagaagagtagcatgttatggttgaagaaagtgaagaaagaaa |
39795185 |
T |
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