View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_low_3 (Length: 483)
Name: NF11108_low_3
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 44409472 - 44409922
Alignment:
| Q |
19 |
tgaatctctgaaagcagtaaaatacattgattctgaacacttcacagtaccagaaggaaaaagagcaattgaacttgtagcaggaaaagaaagtgcactt |
118 |
Q |
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| T |
44409472 |
tgaatctctgaaagcagtaaaatacattgattctgaacacttcacagtaccagaaggaaaaagagcaattgaacttgtagcaggaaaagaaagtgcactt |
44409571 |
T |
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| Q |
119 |
gcacaagaagtattcacaacaattggaaaagtttatgtcctcacttttgcagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaagcat |
218 |
Q |
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| T |
44409572 |
gcacaagaagtattcacaacaattggaaaagtttatgtcctcacttttgcagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaagcat |
44409671 |
T |
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| Q |
219 |
ttgctggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactag |
318 |
Q |
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| T |
44409672 |
ttgctggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactag |
44409771 |
T |
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| Q |
319 |
gattaggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttat |
418 |
Q |
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| T |
44409772 |
gattaggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttat |
44409871 |
T |
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| Q |
419 |
cccaacaaccatacctaagtagtatatatgctgcaaatcaaaatgctaccttcat |
473 |
Q |
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| T |
44409872 |
cccaacaaccatacctaagtag----tatgctgcaaatcaaaatgctaccttcat |
44409922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 2287502 - 2287543
Alignment:
| Q |
367 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
408 |
Q |
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| T |
2287502 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
2287543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 2287164 - 2287260
Alignment:
| Q |
29 |
aaagcagtaaaatacattgattctgaacacttcacagtaccagaaggaaaaagagcaattgaacttgtagcaggaaaagaaagtgcacttgcacaag |
125 |
Q |
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| T |
2287164 |
aaagcagtaaaatacctagactcagctcatttctcagttccacaaggcacaagagcagttgaactagtggcaggaaaagaaagtgcaatagcacaag |
2287260 |
T |
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