View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11108_low_5 (Length: 463)

Name: NF11108_low_5
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11108_low_5
NF11108_low_5
[»] chr2 (13 HSPs)
chr2 (18-454)||(37028349-37028785)
chr2 (17-103)||(37012462-37012548)
chr2 (148-235)||(37012593-37012680)
chr2 (425-454)||(23684957-23684986)
chr2 (425-454)||(28108455-28108484)
chr2 (425-454)||(28301432-28301461)
chr2 (425-454)||(30757648-30757677)
chr2 (425-454)||(33751459-33751488)
chr2 (425-454)||(41436077-41436106)
chr2 (426-454)||(4794572-4794600)
chr2 (426-454)||(5007622-5007650)
chr2 (426-454)||(6075497-6075525)
chr2 (426-454)||(44424343-44424371)
[»] chr4 (11 HSPs)
chr4 (386-454)||(22496757-22496825)
chr4 (424-454)||(42185876-42185906)
chr4 (425-454)||(32559161-32559190)
chr4 (425-454)||(38976989-38977018)
chr4 (425-454)||(47787927-47787956)
chr4 (425-454)||(49306585-49306614)
chr4 (425-454)||(54729563-54729592)
chr4 (426-454)||(17237042-17237070)
chr4 (426-454)||(41436480-41436508)
chr4 (426-454)||(47846898-47846926)
chr4 (426-454)||(49448840-49448868)
[»] chr3 (12 HSPs)
chr3 (422-453)||(54845597-54845628)
chr3 (424-454)||(9218142-9218172)
chr3 (424-454)||(38600886-38600916)
chr3 (425-454)||(32827384-32827413)
chr3 (425-454)||(47684765-47684794)
chr3 (425-454)||(54493906-54493935)
chr3 (426-454)||(8706147-8706175)
chr3 (426-454)||(9058034-9058062)
chr3 (426-454)||(30261582-30261610)
chr3 (426-454)||(37041953-37041981)
chr3 (426-454)||(45746365-45746393)
chr3 (426-454)||(47496168-47496196)
[»] chr1 (9 HSPs)
chr1 (423-454)||(42309428-42309459)
chr1 (425-455)||(3555635-3555665)
chr1 (395-454)||(38664369-38664428)
chr1 (425-454)||(8327715-8327744)
chr1 (425-454)||(8773240-8773269)
chr1 (425-454)||(26755974-26756003)
chr1 (425-454)||(45889329-45889358)
chr1 (425-454)||(46496016-46496045)
chr1 (426-454)||(29225752-29225780)
[»] chr7 (7 HSPs)
chr7 (424-454)||(31581523-31581553)
chr7 (425-454)||(2846756-2846785)
chr7 (425-454)||(29434660-29434689)
chr7 (425-454)||(40038191-40038220)
chr7 (425-454)||(44604557-44604586)
chr7 (426-454)||(25778743-25778771)
chr7 (425-453)||(46288512-46288540)
[»] chr6 (2 HSPs)
chr6 (424-454)||(33109370-33109400)
chr6 (425-453)||(15081421-15081449)
[»] scaffold0321 (1 HSPs)
scaffold0321 (425-454)||(9629-9658)
[»] scaffold0058 (1 HSPs)
scaffold0058 (425-454)||(14454-14483)
[»] scaffold0001 (1 HSPs)
scaffold0001 (425-454)||(394776-394805)
[»] chr8 (5 HSPs)
chr8 (425-454)||(32967357-32967386)
chr8 (426-454)||(2195467-2195495)
chr8 (426-454)||(7258447-7258475)
chr8 (426-454)||(8418382-8418410)
chr8 (426-454)||(44975829-44975857)
[»] chr5 (6 HSPs)
chr5 (425-454)||(858333-858362)
chr5 (425-454)||(11099558-11099587)
chr5 (425-454)||(15814659-15814688)
chr5 (425-454)||(17243035-17243064)
chr5 (425-454)||(35334607-35334636)
chr5 (426-454)||(39212632-39212660)
[»] scaffold0578 (1 HSPs)
scaffold0578 (426-454)||(4028-4056)


Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 37028349 - 37028785
Alignment:
Q  18 ggttatggtatatgcaggagtccatttggtgctcatggtgacaacccaaatgaaggtgaaccatgactcacaaagaaatgcaacaagccaagggaaggga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37028349 ggttatggtatatgcaggagtccatttggtgctcatggtgacaacccaaatgaaggtgaaccatgactcacaaagaaatgcaacaagccaagggaaggga 37028448  T
Q  118 taattgttgatatataatatacggtaaccgagaagcaagagaaggaagagcaaagtgaaggaatccatcactcttgaaaatgtgtatttcaacaaaaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37028449 taattgttgatatataatatacggtaaccgagaagcaagagaaggaagagcaaagtgaaggaatccatcactcttgaaaatgtgtatttcaacaaaaatt 37028548  T
Q  218 tatcatagagagggagagggttttgattggccatgttgaactcaaacagagaaaacaaaacagagccttctttattggttgcaactcagagccggacata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37028549 tatcatagagagggagagggttttgattggccatgttgaactcaaacagagaaaacaaaacagagccttctttattggttgcaactcagagccggacata 37028648  T
Q  318 catttataataaaacctactcactcgtcccttggttttaaaacaatattgtttttaaaataactgttgcattttccattttaatataatattaattannn 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       
T  37028649 catttataataaaacctactcactcgtcccttggttttaaaacaatattgtttttaaaataactgttgcattttcctttttaatataatattaattattt 37028748  T
Q  418 nnnnctatttataactctaattaatactactttcatc 454  Q
        |||||||||||||||||||||| ||||||||||    
T  37028749 ttttctatttataactctaattaatattactttcatc 37028785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 37012462 - 37012548
Alignment:
Q  17 aggttatggtatatgcaggagtccatttggtgctcatggtgacaacccaaatgaaggtgaaccatgactcacaaagaaatgcaacaa 103  Q
    ||||| |||||| |||||||||||||||||||||||||||   || |||| ||| ||| |||||||||||||| |||||||||||||    
T  37012462 aggttttggtatgtgcaggagtccatttggtgctcatggttgtaatccaagtgatggtaaaccatgactcacatagaaatgcaacaa 37012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 37012593 - 37012680
Alignment:
Q  148 agaagcaagagaaggaagagcaaagtgaaggaatccatcactcttgaaaatgtgtatttcaacaaaaatttatcatagagagggagag 235  Q
    ||||| ||||  |||| |||||| |||||||||||||| |||||||||||||||| ||| | | | | ||| ||||||||||||||||    
T  37012593 agaagtaagaagaggaggagcaatgtgaaggaatccataactcttgaaaatgtgtgtttgacccatattttttcatagagagggagag 37012680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 23684957 - 23684986
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  23684957 tttataactctaattaatactactttcatc 23684986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 28108484 - 28108455
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  28108484 tttataactctaattaatactactttcatc 28108455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 28301432 - 28301461
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  28301432 tttataactctaattaatactactttcatc 28301461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 30757677 - 30757648
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  30757677 tttataactctaattaatactactttcatc 30757648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 33751459 - 33751488
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  33751459 tttataactctaattaatactactttcatc 33751488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 41436077 - 41436106
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  41436077 tttataactctaattaatactactttcatc 41436106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 4794572 - 4794600
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  4794572 ttataactctaattaatactactttcatc 4794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 5007650 - 5007622
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  5007650 ttataactctaattaatactactttcatc 5007622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 6075497 - 6075525
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  6075497 ttataactctaattaatactactttcatc 6075525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 44424371 - 44424343
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  44424371 ttataactctaattaatactactttcatc 44424343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 22496825 - 22496757
Alignment:
Q  386 cattttccattttaatataatattaattannnnnnnctatttataactctaattaatactactttcatc 454  Q
    |||||| | ||||||||||||||||||||       |  ||||||||||||||||||||||||||||||    
T  22496825 cattttactttttaatataatattaattattttttcccctttataactctaattaatactactttcatc 22496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 454
Target Start/End: Complemental strand, 42185906 - 42185876
Alignment:
Q  424 atttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||||    
T  42185906 atttataactctaattaatactactttcatc 42185876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 32559161 - 32559190
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  32559161 tttataactctaattaatactactttcatc 32559190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 38976989 - 38977018
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  38976989 tttataactctaattaatactactttcatc 38977018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 47787956 - 47787927
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  47787956 tttataactctaattaatactactttcatc 47787927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 49306585 - 49306614
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  49306585 tttataactctaattaatactactttcatc 49306614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 54729592 - 54729563
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  54729592 tttataactctaattaatactactttcatc 54729563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 17237042 - 17237070
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  17237042 ttataactctaattaatactactttcatc 17237070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 41436480 - 41436508
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  41436480 ttataactctaattaatactactttcatc 41436508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 47846898 - 47846926
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  47846898 ttataactctaattaatactactttcatc 47846926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 49448840 - 49448868
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  49448840 ttataactctaattaatactactttcatc 49448868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 453
Target Start/End: Complemental strand, 54845628 - 54845597
Alignment:
Q  422 ctatttataactctaattaatactactttcat 453  Q
    ||||||||||||||||||||||||||||||||    
T  54845628 ctatttataactctaattaatactactttcat 54845597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 454
Target Start/End: Original strand, 9218142 - 9218172
Alignment:
Q  424 atttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||||    
T  9218142 atttataactctaattaatactactttcatc 9218172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 454
Target Start/End: Complemental strand, 38600916 - 38600886
Alignment:
Q  424 atttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||||    
T  38600916 atttataactctaattaatactactttcatc 38600886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 32827413 - 32827384
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  32827413 tttataactctaattaatactactttcatc 32827384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 47684765 - 47684794
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  47684765 tttataactctaattaatactactttcatc 47684794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 54493906 - 54493935
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  54493906 tttataactctaattaatactactttcatc 54493935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 8706147 - 8706175
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  8706147 ttataactctaattaatactactttcatc 8706175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 9058034 - 9058062
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  9058034 ttataactctaattaatactactttcatc 9058062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 30261610 - 30261582
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  30261610 ttataactctaattaatactactttcatc 30261582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 37041981 - 37041953
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  37041981 ttataactctaattaatactactttcatc 37041953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 45746365 - 45746393
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  45746365 ttataactctaattaatactactttcatc 45746393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 47496168 - 47496196
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  47496168 ttataactctaattaatactactttcatc 47496196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 454
Target Start/End: Original strand, 42309428 - 42309459
Alignment:
Q  423 tatttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||||    
T  42309428 tatttataactctaattaatactactttcatc 42309459  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 455
Target Start/End: Complemental strand, 3555665 - 3555635
Alignment:
Q  425 tttataactctaattaatactactttcatct 455  Q
    |||||||||||||||||||||||||||||||    
T  3555665 tttataactctaattaatactactttcatct 3555635  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 454
Target Start/End: Original strand, 38664369 - 38664428
Alignment:
Q  395 ttttaatataatattaattannnnnnnctatttataactctaattaatactactttcatc 454  Q
    |||||||| |||||||||||       || ||||||||||||||||||||||||||||||    
T  38664369 ttttaatacaatattaattatttttttctttttataactctaattaatactactttcatc 38664428  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 8327715 - 8327744
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  8327715 tttataactctaattaatactactttcatc 8327744  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 8773240 - 8773269
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  8773240 tttataactctaattaatactactttcatc 8773269  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 26755974 - 26756003
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  26755974 tttataactctaattaatactactttcatc 26756003  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 45889358 - 45889329
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  45889358 tttataactctaattaatactactttcatc 45889329  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 46496016 - 46496045
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  46496016 tttataactctaattaatactactttcatc 46496045  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 29225752 - 29225780
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  29225752 ttataactctaattaatactactttcatc 29225780  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 454
Target Start/End: Complemental strand, 31581553 - 31581523
Alignment:
Q  424 atttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||||    
T  31581553 atttataactctaattaatactactttcatc 31581523  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 2846785 - 2846756
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  2846785 tttataactctaattaatactactttcatc 2846756  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 29434689 - 29434660
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  29434689 tttataactctaattaatactactttcatc 29434660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 40038220 - 40038191
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  40038220 tttataactctaattaatactactttcatc 40038191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 44604586 - 44604557
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  44604586 tttataactctaattaatactactttcatc 44604557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 25778743 - 25778771
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  25778743 ttataactctaattaatactactttcatc 25778771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 453
Target Start/End: Complemental strand, 46288540 - 46288512
Alignment:
Q  425 tttataactctaattaatactactttcat 453  Q
    |||||||||||||||||||||||||||||    
T  46288540 tttataactctaattaatactactttcat 46288512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 454
Target Start/End: Original strand, 33109370 - 33109400
Alignment:
Q  424 atttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||||    
T  33109370 atttataactctaattaatactactttcatc 33109400  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 453
Target Start/End: Original strand, 15081421 - 15081449
Alignment:
Q  425 tttataactctaattaatactactttcat 453  Q
    |||||||||||||||||||||||||||||    
T  15081421 tttataactctaattaatactactttcat 15081449  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 9658 - 9629
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  9658 tttataactctaattaatactactttcatc 9629  T

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Target: scaffold0058 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 14454 - 14483
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  14454 tttataactctaattaatactactttcatc 14483  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 394776 - 394805
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  394776 tttataactctaattaatactactttcatc 394805  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 32967386 - 32967357
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  32967386 tttataactctaattaatactactttcatc 32967357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 2195467 - 2195495
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  2195467 ttataactctaattaatactactttcatc 2195495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 7258475 - 7258447
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  7258475 ttataactctaattaatactactttcatc 7258447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 8418410 - 8418382
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  8418410 ttataactctaattaatactactttcatc 8418382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 44975857 - 44975829
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  44975857 ttataactctaattaatactactttcatc 44975829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 858333 - 858362
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  858333 tttataactctaattaatactactttcatc 858362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 11099587 - 11099558
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  11099587 tttataactctaattaatactactttcatc 11099558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 15814659 - 15814688
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  15814659 tttataactctaattaatactactttcatc 15814688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 17243064 - 17243035
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  17243064 tttataactctaattaatactactttcatc 17243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 35334636 - 35334607
Alignment:
Q  425 tttataactctaattaatactactttcatc 454  Q
    ||||||||||||||||||||||||||||||    
T  35334636 tttataactctaattaatactactttcatc 35334607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 39212660 - 39212632
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  39212660 ttataactctaattaatactactttcatc 39212632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 4028 - 4056
Alignment:
Q  426 ttataactctaattaatactactttcatc 454  Q
    |||||||||||||||||||||||||||||    
T  4028 ttataactctaattaatactactttcatc 4056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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